View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_high_17 (Length: 390)

Name: NF2057_high_17
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_high_17
NF2057_high_17
[»] chr2 (11 HSPs)
chr2 (148-361)||(41700845-41701065)
chr2 (2-142)||(41701169-41701309)
chr2 (219-292)||(24450600-24450673)
chr2 (245-327)||(30930185-30930269)
chr2 (219-311)||(24548450-24548543)
chr2 (230-311)||(28143928-28144012)
chr2 (235-293)||(45002376-45002433)
chr2 (230-270)||(3912528-3912568)
chr2 (219-311)||(24450980-24451074)
chr2 (236-289)||(630171-630224)
chr2 (230-270)||(30930058-30930098)
[»] chr7 (32 HSPs)
chr7 (219-311)||(33536670-33536764)
chr7 (230-327)||(20561579-20561678)
chr7 (230-324)||(2486377-2486473)
chr7 (219-327)||(21665628-21665737)
chr7 (230-290)||(8237847-8237907)
chr7 (221-293)||(44603916-44603988)
chr7 (230-293)||(1502224-1502287)
chr7 (230-289)||(2739815-2739874)
chr7 (230-300)||(25480486-25480556)
chr7 (230-290)||(18869528-18869588)
chr7 (245-293)||(44606952-44607000)
chr7 (219-286)||(18869739-18869806)
chr7 (230-288)||(8669610-8669668)
chr7 (230-309)||(9669436-9669517)
chr7 (219-288)||(8669738-8669807)
chr7 (219-288)||(8669877-8669946)
chr7 (230-311)||(29529633-29529714)
chr7 (219-287)||(24865204-24865272)
chr7 (219-324)||(33536854-33536961)
chr7 (230-293)||(3743122-3743185)
chr7 (219-311)||(9669649-9669742)
chr7 (221-292)||(9677059-9677130)
chr7 (230-289)||(21666244-21666303)
chr7 (219-303)||(28644942-28645028)
chr7 (219-276)||(21666075-21666132)
chr7 (219-309)||(24718992-24719084)
chr7 (236-289)||(24719213-24719266)
chr7 (232-289)||(28645295-28645352)
chr7 (219-263)||(14657334-14657378)
chr7 (230-311)||(29239370-29239453)
chr7 (219-290)||(35144569-35144643)
chr7 (230-290)||(42586214-42586274)
[»] chr4 (15 HSPs)
chr4 (219-293)||(25051198-25051272)
chr4 (219-327)||(25051331-25051440)
chr4 (219-293)||(25051038-25051112)
chr4 (230-324)||(37996671-37996767)
chr4 (221-289)||(11132268-11132336)
chr4 (230-293)||(32668835-32668898)
chr4 (230-309)||(13540460-13540541)
chr4 (236-326)||(19583368-19583457)
chr4 (238-311)||(16177287-16177362)
chr4 (219-311)||(34852996-34853088)
chr4 (219-311)||(13540673-13540766)
chr4 (221-292)||(13542003-13542074)
chr4 (236-286)||(19585334-19585384)
chr4 (219-324)||(25446942-25447047)
chr4 (230-278)||(10326111-10326159)
[»] chr1 (22 HSPs)
chr1 (219-303)||(43761347-43761433)
chr1 (219-292)||(3592626-3592699)
chr1 (230-324)||(34903612-34903708)
chr1 (230-286)||(39313088-39313144)
chr1 (205-270)||(3591774-3591840)
chr1 (231-293)||(11080645-11080707)
chr1 (236-327)||(15198750-15198843)
chr1 (219-324)||(16682063-16682169)
chr1 (219-292)||(15913300-15913373)
chr1 (221-303)||(32034942-32035026)
chr1 (219-286)||(16086900-16086967)
chr1 (219-270)||(39157547-39157598)
chr1 (230-323)||(39312935-39313032)
chr1 (231-293)||(15121826-15121887)
chr1 (231-293)||(15146014-15146075)
chr1 (219-289)||(46022945-46023015)
chr1 (247-309)||(3591906-3591970)
chr1 (236-289)||(48994897-48994950)
chr1 (219-312)||(15114838-15114933)
chr1 (219-312)||(15123048-15123143)
chr1 (219-312)||(15139354-15139449)
chr1 (219-312)||(15147236-15147331)
[»] chr6 (17 HSPs)
chr6 (230-323)||(31794944-31795038)
chr6 (219-287)||(11959866-11959934)
chr6 (236-324)||(5089615-5089705)
chr6 (206-293)||(11854208-11854295)
chr6 (247-303)||(15555445-15555501)
chr6 (219-286)||(2999472-2999539)
chr6 (230-293)||(15554430-15554493)
chr6 (211-324)||(15556434-15556547)
chr6 (225-284)||(15554776-15554836)
chr6 (245-293)||(15555126-15555174)
chr6 (240-327)||(31794770-31794860)
chr6 (232-287)||(15555933-15555988)
chr6 (240-286)||(15556292-15556338)
chr6 (219-293)||(15558795-15558868)
chr6 (230-325)||(4979870-4979964)
chr6 (219-289)||(7566121-7566188)
chr6 (230-311)||(31480956-31481039)
[»] chr5 (23 HSPs)
chr5 (219-269)||(40373650-40373700)
chr5 (240-327)||(41912815-41912904)
chr5 (244-327)||(26657521-26657605)
chr5 (244-327)||(26929109-26929193)
chr5 (232-327)||(3419995-3420091)
chr5 (219-286)||(17762113-17762180)
chr5 (230-311)||(1832902-1832982)
chr5 (219-281)||(37447741-37447803)
chr5 (230-311)||(40318368-40318448)
chr5 (230-311)||(41409092-41409172)
chr5 (230-311)||(17762794-17762875)
chr5 (205-270)||(41912704-41912768)
chr5 (220-292)||(17694034-17694106)
chr5 (230-303)||(22554745-22554820)
chr5 (257-325)||(12048740-12048810)
chr5 (230-289)||(21118353-21118412)
chr5 (234-288)||(54194-54248)
chr5 (257-311)||(17694197-17694253)
chr5 (221-327)||(21117522-21117630)
chr5 (249-286)||(22554269-22554306)
chr5 (231-304)||(3419811-3419886)
chr5 (245-289)||(22555121-22555165)
chr5 (221-293)||(40373794-40373866)
[»] chr3 (21 HSPs)
chr3 (219-289)||(1102328-1102398)
chr3 (188-270)||(3142476-3142558)
chr3 (219-324)||(30081519-30081626)
chr3 (228-290)||(7165500-7165562)
chr3 (219-287)||(8494242-8494310)
chr3 (230-290)||(20126209-20126269)
chr3 (219-303)||(4144981-4145067)
chr3 (230-309)||(31720862-31720941)
chr3 (219-311)||(37834445-37834538)
chr3 (219-284)||(4160961-4161026)
chr3 (247-327)||(495180-495262)
chr3 (219-303)||(4161146-4161232)
chr3 (219-327)||(12946498-12946607)
chr3 (231-303)||(13698423-13698497)
chr3 (218-277)||(27532317-27532376)
chr3 (236-311)||(494645-494722)
chr3 (219-311)||(20105992-20106083)
chr3 (251-304)||(20126414-20126467)
chr3 (219-294)||(3142158-3142234)
chr3 (261-293)||(3142380-3142412)
chr3 (230-286)||(25810419-25810475)
[»] chr8 (11 HSPs)
chr8 (219-292)||(34913635-34913708)
chr8 (257-301)||(25699301-25699345)
chr8 (219-293)||(13004036-13004108)
chr8 (219-325)||(42498982-42499089)
chr8 (219-327)||(36648068-36648177)
chr8 (235-299)||(6128112-6128176)
chr8 (188-286)||(25699650-25699748)
chr8 (230-287)||(34913778-34913835)
chr8 (219-324)||(25721726-25721833)
chr8 (230-311)||(36647432-36647515)
chr8 (218-270)||(36647938-36647990)
[»] scaffold1609 (3 HSPs)
scaffold1609 (236-304)||(584-654)
scaffold1609 (219-289)||(251-320)
scaffold1609 (245-303)||(406-466)
[»] scaffold0028 (1 HSPs)
scaffold0028 (230-324)||(77439-77534)
[»] scaffold0636 (1 HSPs)
scaffold0636 (219-327)||(1121-1231)
[»] scaffold0013 (1 HSPs)
scaffold0013 (230-325)||(51160-51256)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 148 - 361
Target Start/End: Complemental strand, 41701065 - 41700845
Alignment:
Q  148 tttgtttcgatcaatatt-gtgtcacactctaatgtgcttatatatat------gaagaatcaatttttcatatatccatatgagaaagttttgaaaact 240  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||      ||||||||||||||||||| |||||| |||||||||||||||||||    
T  41701065 tttgtttcgatcaatatttgtgtcacactctaatgtgcttatatatatatatatgaagaatcaatttttcatacatccatgtgagaaagttttgaaaact 41700966  T
Q  241 cataactattttcaa-catatcaacattaatttagtgtttctattaaatattttgattttatatggaaaacaacgtcaaatatttgcaaagaaattcaca 339  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  41700965 cataactattttcaaacatatcaa-attaatttagtgtttttattaaatatttttattttatatgcaaaacaacgtcaaatatttgcaaagaaattcaca 41700867  T
Q  340 ttcatctcttgaatacacaacc 361  Q
    ||||||||||||||| ||||||    
T  41700866 ttcatctcttgaatatacaacc 41700845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 41701309 - 41701169
Alignment:
Q  2 gagatgaaacaacacaagagatggtaaacagaaaaacgctgatttgaaacaattccaaaaaggaatggaggtaattaccgaaggataacatgcagaaatc 101  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701309 gagaagaaacaacacaagagatggtaaacagagaaacgctgatttgaaacaattccaaaaaggaatggaggtaattaccgaaggataacatgcagaaatc 41701210  T
Q  102 ggataaatgaaattggnnnnnnntgataatttatatgagaa 142  Q
    ||||||||||||||||       ||||||||||||||||||    
T  41701209 ggataaatgaaattggaaaaaaatgataatttatatgagaa 41701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 24450673 - 24450600
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 292  Q
    |||||| ||| |||||||||||||| |||||||| || |||||||||| ||| |||||||||||||||||||||    
T  24450673 atatgataaaattttgaaaactcatgactatttttaaaatatcaacatcaatgtagtgtttctattaaatattt 24450600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 30930269 - 30930185
Alignment:
Q  245 actattttcaacatatcaacattaatttagtgtttctattaaatattt--tgattttatatggaaaacaacgtcaaatatttgca 327  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||  | |||||||||| |||||| | | |||||||||||    
T  30930269 actatttttaaaatatcaacattaatatagtgtttctattaaatattttattattttatatgcaaaacaccattaaatatttgca 30930185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 24548450 - 24548543
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||| ||| ||||||||||||||||||||||| || ||| ||| |||||| |||||||| |||||||||  |||| |||||||||| ||||||    
T  24548450 atatgataaaattttgaaaactcataactatttttaa-ataacaaaattaatgtagtgtttatattaaataactttttattttatatgcaaaaca 24548543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 28143928 - 28144012
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata---ttttgattttatatggaaaaca 311  Q
    ||||| |||||||| ||||||||||| | |||||||||||| |||| |||||||||||||   |||| |||||||||| ||||||    
T  28143928 ttttggaaactcatcactattttcaaaaaatcaacattaatgtagtttttctattaaatatcttttttattttatatgtaaaaca 28144012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 45002433 - 45002376
Alignment:
Q  235 aaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||||||||||||||  || ||| |||||||||||||||||||| ||||||||||||    
T  45002433 aaaactcataactatttgaaa-ataccaacattaatttagtgtttcaattaaatatttt 45002376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 3912568 - 3912528
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaat 270  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  3912568 ttttgaaaactcattactattttcaaaatatcaacattaat 3912528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 24451074 - 24450980
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||| ||| ||||| ||| |||||||||||||||| || ||||||  ||| |||| | |||||||||||  |||| |||||||||| ||||||    
T  24451074 atatgataaaattttggaaagtcataactattttcaaaatttcaacaccaatgtagtttgtctattaaataactttttattttatatgcaaaaca 24450980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 630224 - 630171
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||| | |||||||||||  ||||||||||||| |||||||||| |||||||    
T  630224 aaactcgtgactattttcaaattatcaacattaatatagtgtttctcttaaata 630171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 30930098 - 30930058
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaat 270  Q
    ||||||||| | || ||||||||||||||||||||||||||    
T  30930098 ttttgaaaatttatgactattttcaacatatcaacattaat 30930058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 33536670 - 33536764
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa--atattttgattttatatggaaaaca 311  Q
    |||||| ||| |||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||  | ||||| |||||||||| ||||||    
T  33536670 atatgataaaattttgaaaactcgtgactattttcaaaatatcaacattaatatagtgtttctattaattaaatttttattttatatgcaaaaca 33536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 20561678 - 20561579
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat--tttgattttatatggaaaacaacgtcaaatatttgca 327  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||||||||||||  |||||||  | | |||||||||| |||||| ||| |||||||||||    
T  20561678 ttttaaaaactcatgactattttcaaaatatcaatattaatttagtgtttcttataaatattctattattttatatgcaaaacaccgttaaatatttgca 20561579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 2486377 - 2486473
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatattt 324  Q
    ||||||||||||||||||||||| || |||| || |||||| |||||||||||||| ||  ||||| |||||| ||| |||| ||||| ||||||||    
T  2486377 ttttgaaaactcataactatttttaaaatattaaaattaatgtagtgtttctattagataaattttaattttacatgcaaaataacgttaaatattt 2486473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 21665737 - 21665628
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtca 317  Q
    |||||| ||| |||| ||||||| | |||||||| || |||||||||| ||| |||||||||||||||||| |||| |||||||||  |||||| | | |    
T  21665737 atatgataaacttttaaaaactcgtgactatttttaaaatatcaacataaatatagtgtttctattaaatattttttattttatatacaaaacaccatta 21665638  T
Q  318 aatatttgca 327  Q
    ||||||||||    
T  21665637 aatatttgca 21665628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 8237847 - 8237907
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 290  Q
    |||||||||||||| ||||||||||| |||||||||||||| || ||||||| ||||||||    
T  8237847 ttttgaaaactcatgactattttcaaaatatcaacattaatataatgtttctcttaaatat 8237907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 44603988 - 44603916
Alignment:
Q  221 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||| ||| ||||||||| || | |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  44603988 atgataaaattttgaaaaatcgtgactattttaaaaatatcaacattaatttagtgtttctattatatatttt 44603916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 1502287 - 1502224
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||||||||||| ||||||||||| |||| |||||||||||| ||||||||| || ||||||    
T  1502287 ttttgaaaactcatcactattttcaaaatataaacattaatttattgtttctatcaattatttt 1502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 2739815 - 2739874
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    ||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||||||    
T  2739815 ttttgaaaacttatgactattttcaaaatatcaacattaatgtagtgtgtctattaaata 2739874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 25480486 - 25480556
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgatttta 300  Q
    |||| ||||||||| | |||||| || |||||||||||||| |||||||||||||||||||| | ||||||    
T  25480486 ttttaaaaactcatgattatttttaaaatatcaacattaatgtagtgtttctattaaatattattatttta 25480556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 18869588 - 18869528
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 290  Q
    |||||||||||| | | ||||||||| |||||||||||||| || ||||||||||||||||    
T  18869588 ttttgaaaactcgtgattattttcaaaatatcaacattaatatactgtttctattaaatat 18869528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 44607000 - 44606952
Alignment:
Q  245 actattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  44607000 actatttttaaaatatcaacattaatttagtgtttctattagatatttt 44606952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 18869806 - 18869739
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    |||||| ||| |||||||||||||||| | |||||||| ||||||||||||| | |||||| ||||||    
T  18869806 atatgataaaattttgaaaactcataattgttttcaacctatcaacattaatgttgtgtttgtattaa 18869739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 8669610 - 8669668
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 288  Q
    |||||||||||||  ||| ||||||| |||| ||||||||| |||||||||||||||||    
T  8669610 ttttgaaaactcacgactgttttcaaaatatgaacattaatgtagtgtttctattaaat 8669668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 9669436 - 9669517
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 309  Q
    |||| ||||||||| ||||||||||| ||||||| ||| || ||||| ||||||||||||  |||| |||||||||| ||||    
T  9669436 ttttaaaaactcatgactattttcaaaatatcaaaatttatgtagtgcttctattaaataactttttattttatatgtaaaa 9669517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 8669738 - 8669807
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 288  Q
    |||||| ||| ||||||||||||   ||| ||||||| |||| ||||||||| |||||||||||||||||    
T  8669738 atatgataaaattttgaaaactcgcgactgttttcaaaatatgaacattaatgtagtgtttctattaaat 8669807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 8669877 - 8669946
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 288  Q
    |||||| ||| ||||||||||||   ||| ||||||| |||| ||||||||| |||||||||||||||||    
T  8669877 atatgataaaattttgaaaactcgcgactgttttcaaaatatgaacattaatgtagtgtttctattaaat 8669946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 29529633 - 29529714
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||| ||||||||| ||||||||||| ||  ||| |||||| ||||||||||||||||||  |||| |||||||||| ||||||    
T  29529633 ttttaaaaactcatcactattttcaaaat--caaaattaatgtagtgtttctattaaataactttttattttatatgcaaaaca 29529714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 24865204 - 24865272
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 287  Q
    |||||| ||| |||| |||| |||| ||||||||||| ||||||| |||||| |||||||| |||||||    
T  24865204 atatgataaaattttaaaaattcatgactattttcaaaatatcaaaattaatgtagtgtttttattaaa 24865272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 33536854 - 33536961
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 316  Q
    |||||| ||| |||||||||| | | ||||||||||| |||||||||| ||| || ||| |||||||||||  |||| |||||||||  ||||||  ||     
T  33536854 atatgataaaattttgaaaacacgtgactattttcaaaatatcaacatgaatgtattgtgtctattaaataattttttattttatatttaaaacattgtt 33536953  T
Q  317 aaatattt 324  Q
    ||||||||    
T  33536954 aaatattt 33536961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 3743122 - 3743185
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||||||||| | |||||||| || |||| ||||| ||| || |||||||||||||||||||    
T  3743122 ttttgaaaactcgtgactatttttaaaatataaacatcaatataatgtttctattaaatatttt 3743185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 9669649 - 9669742
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||| ||| | |||||||||||| ||||||||||| |||| || |||||  ||||||||||||||||||   ||| |||||||||| ||||||    
T  9669649 atatgataaaatattgaaaactcatgactattttcaaaatat-aaaattaaggtagtgtttctattaaataacgttttattttatatgcaaaaca 9669742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 9677059 - 9677130
Alignment:
Q  221 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 292  Q
    |||| ||| |||| ||| || ||||||||||| || |||||||||||||| || |||||||| |||||||||    
T  9677059 atgataaaattttaaaacctaataactattttaaaaatatcaacattaatataatgtttctaataaatattt 9677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 21666303 - 21666244
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    ||||||||| |||| ||||||||||| |||| || |||||| |||| |||||||||||||    
T  21666303 ttttgaaaattcatgactattttcaaaatattaaaattaatgtagtatttctattaaata 21666244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 28644942 - 28645028
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 303  Q
    |||||| ||| ||||  |||||| | ||||||||||| |||| ||||||||| |||||| ||||||||||  ||||| |||||||||    
T  28644942 atatgataaaattttagaaactcgtgactattttcaaaatattaacattaatgtagtgtgtctattaaataaatttttattttatat 28645028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 21666132 - 21666075
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtg 276  Q
    |||||| ||| |||||||||||||| ||||||||||| |||| ||| ||||| |||||    
T  21666132 atatgataaaattttgaaaactcatgactattttcaaaatataaaccttaatgtagtg 21666075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 309
Target Start/End: Complemental strand, 24719084 - 24718992
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa--atattttgattttatatggaaaa 309  Q
    |||||| ||| ||||||||| | || | |||||| || |||||||||||||  |||||||||||||||  | ||||| |||||||||| ||||    
T  24719084 atatgataaaattttgaaaatttatgagtatttttaaaatatcaacattaacgtagtgtttctattaattaaatttttattttatatgtaaaa 24718992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 24719266 - 24719213
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||| | ||||||||||| ||||||| |||||| |||||| |||||||||||    
T  24719266 aaactcgtcactattttcaaaatatcaatattaatgtagtgtgtctattaaata 24719213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 28645295 - 28645352
Alignment:
Q  232 ttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||||||||| | |||||| || |||| ||||| ||| ||||||||||||||||||    
T  28645295 ttgaaaactcatgattatttttaatatataaacatcaatgtagtgtttctattaaata 28645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 14657334 - 14657378
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaa 263  Q
    |||||| || ||||||||||||||| |||||||||||||| ||||    
T  14657334 atatgataatgttttgaaaactcatgactattttcaacatgtcaa 14657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 29239453 - 29239370
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||||||| ||| |||||||||||   |||||||| ||| |||||||| |||||||||  |||| |||||| ||| ||||||    
T  29239453 ttttgaaaacgcatgactattttcaaataatcaacatcaatgtagtgtttttattaaataactttttattttacatgcaaaaca 29239370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 35144643 - 35144569
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatat---caacattaatttagtgtttctattaaatat 290  Q
    |||||||||| |||||||||||||| || ||||| || ||||   |||||||||| ||| |||| ||||||||||    
T  35144643 atatgagaaaattttgaaaactcatgacaatttttaaaatatcaacaacattaatatagcgtttatattaaatat 35144569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 42586214 - 42586274
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 290  Q
    ||||| |||||| | | ||||||||| |||||||||| ||| ||||||| |||||||||||    
T  42586214 ttttggaaactcgtgattattttcaaaatatcaacatcaatgtagtgttactattaaatat 42586274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 25051272 - 25051198
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||| ||| ||| ||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  25051272 atatgataaaatttggaaaacttataactattttcaaaatatcaatattaatatagtgtttctattaaatatttt 25051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 25051440 - 25051331
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt-tgattttatatggaaaacaacgtca 317  Q
    |||||| ||| |||||||||||||| | |||||| || |||||||||||||| || | |||||||||||||||| | |||||||||| | |||| ||| |    
T  25051440 atatgataaaattttgaaaactcatgattatttttaaaatatcaacattaatatattatttctattaaatatttgttattttatatgtataacaccgtta 25051341  T
Q  318 aatatttgca 327  Q
    ||| ||||||    
T  25051340 aatgtttgca 25051331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 25051112 - 25051038
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||| ||| ||||||||||||||||| |||||||| ||||||  |||||| || ||||||||| |||||||||    
T  25051112 atatgataaaattttgaaaactcataacgattttcaaaatatcagtattaatgtaatgtttctatcaaatatttt 25051038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 37996671 - 37996767
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatattt 324  Q
    |||||||||||||| |||||||| || |||||||||||||| |||||||| | ||||||  ||||| |||||||||  |||||| | | ||||||||    
T  37996671 ttttgaaaactcatgactatttttaaaatatcaacattaatgtagtgtttttgttaaataaattttcattttatatttaaaacaccattaaatattt 37996767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 11132336 - 11132268
Alignment:
Q  221 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||||| ||  |||||||||| |||||||    
T  11132336 atgataaaattttgaaaactcatgactattttcaaaatatcaacatcaaggtagtgtttcttttaaata 11132268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 32668898 - 32668835
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||||||||  | ||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  32668898 ttttgaaaactattgactattttcaaaatttcaacattaatgtagtttttctattaaatatttt 32668835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 13540460 - 13540541
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 309  Q
    |||| ||||||||| ||||||||||| ||||||| ||| || ||||| ||||||||||||  |||| |||||||||| ||||    
T  13540460 ttttaaaaactcatgactattttcaaaatatcaaaatttatgtagtgcttctattaaataactttttattttatatgtaaaa 13540541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 19583457 - 19583368
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatggaaaacaacgtcaaatatttgc 326  Q
    ||||||||||||||||| || ||||| ||| |||| ||||||||||||| |||| | |  ||||| ||| |||||| ||||||||||||||    
T  19583457 aaactcataactatttttaaaatatcgacagtaatgtagtgtttctattgaata-tatctttttacatgcaaaacaccgtcaaatatttgc 19583368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 16177287 - 16177362
Alignment:
Q  238 actcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||| ||||||||||| |||  ||||||||| |||||||| |||||||||  ||||||||||||| | ||||||    
T  16177287 actcatgactattttcaaaataaaaacattaatgtagtgtttttattaaataatttttgattttataagcaaaaca 16177362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 34853088 - 34852996
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaaca 311  Q
    |||||| ||| |||| |||||| || |||| |||||| ||  ||| ||||||||||||||||||||||||  ||||| |||||||||| ||||||    
T  34853088 atatgataaaattttaaaaacttatgactactttcaaaat--caaaattaatttagtgtttctattaaataaatttttattttatatgcaaaaca 34852996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 13540673 - 13540766
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||| ||| | |||||||||||| ||||||||||| |||| || |||||  ||||||||||||||||||   ||| |||||||||| ||||||    
T  13540673 atatgataaaatattgaaaactcatgactattttcaaaatat-aaaattaaggtagtgtttctattaaataacgttttattttatatgcaaaaca 13540766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 13542003 - 13542074
Alignment:
Q  221 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 292  Q
    |||| ||| |||| ||| || ||||||||||| || |||||||||||||| || |||||||| |||||||||    
T  13542003 atgataaaattttaaaacctaataactattttaaaaatatcaacattaatataatgtttctaataaatattt 13542074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 19585384 - 19585334
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    ||||| || ||||||||||| |||||||||||||| |||||||||| ||||    
T  19585384 aaactaatgactattttcaaaatatcaacattaatgtagtgtttctgttaa 19585334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 25446942 - 25447047
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatggaaaacaacgtcaa 318  Q
    |||||| ||| ||||  |||||||| | |||||| || |||||||||| ||| |||||| | ||||||||||||| |  ||||||  |||||| ||| ||    
T  25446942 atatgataaaattttagaaactcatgattatttttaaaatatcaacataaatatagtgtgtttattaaatatttttaagttatatttaaaacaccgttaa 25447041  T
Q  319 atattt 324  Q
    ||||||    
T  25447042 atattt 25447047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 10326159 - 10326111
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtt 278  Q
    |||||||||||| | |||||||| || ||||||||||||||||| ||||    
T  10326159 ttttgaaaactcttgactattttaaaaatatcaacattaatttaatgtt 10326111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 43761347 - 43761433
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatat 303  Q
    |||||| ||| ||||  |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||  |||| |||||||||    
T  43761347 atatgataaaattttagaaactcataactattttcaaaatatcaacatcaatgtagtgtttctattaaataactttttattttatat 43761433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 3592699 - 3592626
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 292  Q
    |||||| ||| |||||||||||| | ||||||||||| |||| ||||||||| |||||||| ||||||||||||    
T  3592699 atatgataaaattttgaaaactcgtgactattttcaaaatattaacattaatgtagtgtttttattaaatattt 3592626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 34903708 - 34903612
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatattt 324  Q
    ||||| |||||| || ||||||| || |||||||||||||| |||||| ||||||||||  ||||| |||||||||  |||||| ||| ||||||||    
T  34903708 ttttggaaactcttacctatttttaaaatatcaacattaatgtagtgtgtctattaaataaatttttattttatatttaaaacaccgttaaatattt 34903612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 39313088 - 39313144
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    |||||||||||| ||||||||||||| ||||||| ||||||  ||||||||||||||    
T  39313088 ttttgaaaactcgtaactattttcaaaatatcaagattaatgcagtgtttctattaa 39313144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 3591840 - 3591774
Alignment:
Q  205 tttttcatatatccatatgagaaagttttgaaaactcat-aactattttcaacatatcaacattaat 270  Q
    ||||| |||| || |||||||||||||||||||||||||  ||||||||||| |||||||| |||||    
T  3591840 tttttaatatttcaatatgagaaagttttgaaaactcatggactattttcaagatatcaacgttaat 3591774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 11080707 - 11080645
Alignment:
Q  231 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||||| |||| |||||||||||  |||||||||||||  ||||||||| |||||||||||    
T  11080707 tttgaaaaatcatcactattttcaaattatcaacattaatacagtgtttcttttaaatatttt 11080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 15198843 - 15198750
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatatttgca 327  Q
    |||||||| | |||| |||| ||||  |||||||| ||||||||||||||||||  |||| |||||||||| |||||| |||  ||||||||||    
T  15198843 aaactcattaatattgtcaaaatatatacattaatatagtgtttctattaaataactttttattttatatgcaaaacaccgttcaatatttgca 15198750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 16682063 - 16682169
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttg-attttatatggaaaacaacgtca 317  Q
    |||||| ||| ||||||||  |||| ||||||||||| ||||  ||| |||| |||||||||||| |||||||||| |||| ||||  |||||| ||| |    
T  16682063 atatgataaaattttgaaagttcatgactattttcaaaatatgtacagtaatgtagtgtttctatcaaatattttgtatttaatattcaaaacaccgtta 16682162  T
Q  318 aatattt 324  Q
    |||||||    
T  16682163 aatattt 16682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 15913300 - 15913373
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 292  Q
    |||||| ||| |||| |||||||| || || |||||| |||||||||||||| ||||| || ||||||||||||    
T  15913300 atatgataaaattttaaaaactcaaaattactttcaaaatatcaacattaatatagtgattttattaaatattt 15913373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 32034942 - 32035026
Alignment:
Q  221 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatat 303  Q
    |||| ||| |||||||||||| | |||||||| || ||||||| |||||| ||||| ||||||||||||  |||| |||||||||    
T  32034942 atgataaaattttgaaaactcgtgactatttttaaaatatcaaaattaatgtagtgcttctattaaataacttttcattttatat 32035026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 16086900 - 16086967
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    |||||||| |||||||||| ||| | |||||||||||||||||||||  |   |||||||||||||||    
T  16086900 atatgagatagttttgaaagctcgtgactattttcaacatatcaacacaatggtagtgtttctattaa 16086967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 39157598 - 39157547
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaat 270  Q
    |||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||    
T  39157598 atatgataaaattttgaaaacttataactattttcaaaatatcaaaattaat 39157547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 39312935 - 39313032
Alignment:
Q  230 ttttgaaaactcataactattttcaacatat--caacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatatt 323  Q
    ||||| |||||||| ||||||||||| | ||  |||||||||| |||||| ||||||||||  ||||| |||||||||  |||||| ||| |||||||    
T  39312935 ttttggaaactcatgactattttcaaaaaatttcaacattaatgtagtgtgtctattaaataaatttttattttatatttaaaacaccgttaaatatt 39313032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 15121887 - 15121826
Alignment:
Q  231 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    ||||||||||| ||||  ||||||| ||||||||| |||| |||||||||| |||||||||||    
T  15121887 tttgaaaactcgtaacatttttcaa-atatcaacaataatatagtgtttctgttaaatatttt 15121826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 15146075 - 15146014
Alignment:
Q  231 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    ||||||||||| ||||  ||||||| ||||||||| |||| |||||||||| |||||||||||    
T  15146075 tttgaaaactcgtaacatttttcaa-atatcaacaataatatagtgtttctgttaaatatttt 15146014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 46023015 - 46022945
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||| ||| || || |||||| | |||||||||||  ||||||||||||| |||||||||| |||||||    
T  46023015 atatgataaaattgtggaaactcgtgactattttcaaattatcaacattaatgtagtgtttctcttaaata 46022945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 3591970 - 3591906
Alignment:
Q  247 tattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 309  Q
    |||||| || |||||||||||||| | ||||||||||||||||  |||| |||||||||| ||||    
T  3591970 tatttttaagatatcaacattaatgttgtgtttctattaaataatttttcattttatatgcaaaa 3591906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 48994897 - 48994950
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||| | |||||||||||  ||||||||||||| |||||||||| |||||||    
T  48994897 aaactcgtgactattttcaaattatcaacattaatgtagtgtttctcttaaata 48994950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 15114933 - 15114838
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaa 312  Q
    |||||| ||| | |||||||||||  ||||||||||| || | ||||| | | ||||||||||| ||||||  |||| |||||||||| |||||||    
T  15114933 atatgataaattattgaaaactcaagactattttcaaaatgtaaacatcattgtagtgtttctaataaataactttttattttatatgcaaaacaa 15114838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 15123143 - 15123048
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaa 312  Q
    |||||| ||| | |||||||||||| ||||||||||| || | ||||| | | ||||||||||| ||||||  | || |||||||||| |||||||    
T  15123143 atatgataaattattgaaaactcatgactattttcaagatgtaaacatcattgtagtgtttctaataaataactgtttattttatatgcaaaacaa 15123048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 15139449 - 15139354
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaa 312  Q
    |||||| ||| | |||||||||||  ||||||||||| || | ||||| | | ||||||||||| ||||||  |||| |||||||||| |||||||    
T  15139449 atatgataaattattgaaaactcaagactattttcaaaatgtaaacatcattgtagtgtttctaataaataactttttattttatatgcaaaacaa 15139354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 15147331 - 15147236
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaa 312  Q
    |||||| ||| | |||||||||||| ||||||||||| || | ||||| | | ||||||||||| ||||||  | || |||||||||| |||||||    
T  15147331 atatgataaattattgaaaactcatgactattttcaagatgtaaacatcattgtagtgtttctaataaataactgtttattttatatgcaaaacaa 15147236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 31794944 - 31795038
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtcaaatatt 323  Q
    |||| ||||||| | ||||||||||| |||||||||||||| ||||| || ||||||||| |||| |||||||||| |||||| ||| |||||||    
T  31794944 ttttaaaaactcgtgactattttcaatatatcaacattaatgtagtgcttttattaaatattttttattttatatgtaaaacaccgttaaatatt 31795038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 11959866 - 11959934
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 287  Q
    |||||| ||| |||||||||||||| | |||||| || |||||||||||||| ||||||||||||||||    
T  11959866 atatgataaatttttgaaaactcattattatttttaaaatatcaacattaatgtagtgtttctattaaa 11959934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 5089705 - 5089615
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatattt 324  Q
    |||||||| | ||||||||| |||||||||||||| ||||||||||||||||||  |||| | |||||||| |||||| |||  |||||||    
T  5089705 aaactcatgattattttcaaaatatcaacattaatgtagtgtttctattaaataactttttactttatatgcaaaacaccgttcaatattt 5089615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 11854208 - 11854295
Alignment:
Q  206 ttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    ||||||| |||| |||||| ||| |||||||||||||| | |||||| || | |||||| ||||| |||||||||| |||||||||||    
T  11854208 ttttcatgtatcgatatgataaaattttgaaaactcattattatttttaaaagatcaactttaatgtagtgtttctgttaaatatttt 11854295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 15555501 - 15555445
Alignment:
Q  247 tattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatat 303  Q
    ||||||||| |||||||||||||| |||||||||||||||||  ||| |||||||||    
T  15555501 tattttcaaaatatcaacattaatatagtgtttctattaaattattttattttatat 15555445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 2999539 - 2999472
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    |||||| ||| |||| |||| |||| ||||||||||| |||||||||| ||| |||||||||||||||    
T  2999539 atatgataaaattttaaaaagtcatgactattttcaaaatatcaacatcaatgtagtgtttctattaa 2999472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 15554493 - 15554430
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||| ||||||||| |  |||||||| |||||||||||||| |||| |||||||||||||||||    
T  15554493 ttttaaaaactcatgatcattttcaaaatatcaacattaatatagtatttctattaaatatttt 15554430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 324
Target Start/End: Complemental strand, 15556547 - 15556434
Alignment:
Q  211 atatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatggaaaac 310  Q
    ||||||| |||||| ||| |||| ||||||||| | | |||| ||||||||||||||||| |||| |||||   |||| |||| |||||||| | ||||     
T  15556547 atatatcgatatgataaattttttaaaactcatgattgtttttaacatatcaacattaatgtagtttttctgagaaatttttttattttataagtaaaat 15556448  T
Q  311 aacgtcaaatattt 324  Q
    | ||| ||||||||    
T  15556447 accgttaaatattt 15556434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 15554836 - 15554776
Alignment:
Q  225 gaaagttttgaaaactcataactattttc-aacatatcaacattaatttagtgtttctatt 284  Q
    |||||||||||||| |||| | ||||||  ||||||||||||||||| |||||||||||||    
T  15554836 gaaagttttgaaaagtcattattattttttaacatatcaacattaatgtagtgtttctatt 15554776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 15555174 - 15555126
Alignment:
Q  245 actattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    ||||||||||| |||||||||||||| |||||||| |||||| ||||||    
T  15555174 actattttcaaaatatcaacattaatgtagtgtttttattaagtatttt 15555126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 31794770 - 31794860
Alignment:
Q  240 tcataactattttcaacatatcaacattaatttagtgtttctattaaatattt---tgattttatatggaaaacaacgtcaaatatttgca 327  Q
    |||| ||||| ||||| ||||| |||||||| ||||||||| ||||| | |||   | ||||||||||||||||||||| || ||||||||    
T  31794770 tcatgactatattcaaaatatcgacattaatgtagtgtttcaattaattttttattttattttatatggaaaacaacgttaactatttgca 31794860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 15555988 - 15555933
Alignment:
Q  232 ttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 287  Q
    |||| ||||| |||||||||| || ||||||||| |||| ||||||||||||||||    
T  15555988 ttgagaactcgtaactattttgaaaatatcaacactaatgtagtgtttctattaaa 15555933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 15556338 - 15556292
Alignment:
Q  240 tcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    |||| ||||||||||| |||||||||||||| | |||||||||||||    
T  15556338 tcatgactattttcaaaatatcaacattaatgttgtgtttctattaa 15556292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 15558868 - 15558795
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||| ||| ||| ||||| |||| ||| |||| || ||||||||||||||||||||||| || ||||||||||    
T  15558868 atatgataaaatttagaaaattcatgactgtttttaaaatatcaacattaatttagtgtttata-taaatatttt 15558795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 4979964 - 4979870
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtcaaatatttg 325  Q
    |||||||||||| | ||||||||||| ||||| |||||||| || | ||| ||||||||| |||| |||||||||  ||||| |||| |||||||||    
T  4979964 ttttgaaaactcgtgactattttcaaaatatcgacattaatgta-tttttttattaaatattttttattttatatacaaaac-acgttaaatatttg 4979870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 7566121 - 7566188
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||| ||| |||| ||||||||| ||||||||||| ||   || |||||| ||||||||||||||||||    
T  7566121 atatgataaaattttaaaaactcatgactattttcaaaat---aaaattaatgtagtgtttctattaaata 7566188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 31481039 - 31480956
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttg--attttatatggaaaaca 311  Q
    |||||||||||| | ||||||||| | |||| || ||| || || ||||||||||||||| ||||  |||||||||| ||||||    
T  31481039 ttttgaaaactcgttactattttctaaatattaatattgatgtaatgtttctattaaatactttgttattttatatgcaaaaca 31480956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 40373700 - 40373650
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaa 269  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  40373700 atatgagaaagttttgaaaacttatgactattttcaacatatcaacattaa 40373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 41912904 - 41912815
Alignment:
Q  240 tcataactattttcaacatatcaacattaatttagtgtttctattaaatattttg--attttatatggaaaacaacgtcaaatatttgca 327  Q
    |||| ||||||||||| |||||||||||||| |||||||| || ||||||| |||  |||||||||| |||||| ||| |||||||||||    
T  41912904 tcatgactattttcaaaatatcaacattaatatagtgtttttaataaatatgttgtcattttatatgcaaaacaccgttaaatatttgca 41912815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 26657605 - 26657521
Alignment:
Q  244 aactattttcaacatatcaacattaatttagtgtttctattaaat-attttgattttatatggaaaacaacgtcaaatatttgca 327  Q
    |||||||||||  ||||||||||| || ||||||||||||||||| ||||| |||||||||  |||||| ||| |||||||||||    
T  26657605 aactattttcagaatatcaacattcatgtagtgtttctattaaataatttttattttatatttaaaacaccgttaaatatttgca 26657521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 26929193 - 26929109
Alignment:
Q  244 aactattttcaacatatcaacattaatttagtgtttctattaaat-attttgattttatatggaaaacaacgtcaaatatttgca 327  Q
    |||||||||||  ||||||||||| || ||||||||||||||||| ||||| |||||||||  |||||| ||| |||||||||||    
T  26929193 aactattttcagaatatcaacattcatgtagtgtttctattaaataatttttattttatatttaaaacaccgttaaatatttgca 26929109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 3420091 - 3419995
Alignment:
Q  232 ttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgat-tttatatggaaaacaacgtcaaatatttgca 327  Q
    ||||||| | || ||||||||||| |||||||||||| | || ||||| |||||||||||||| | ||| |||| |||||| ||| |||||||||||    
T  3420091 ttgaaaatttatgactattttcaaaatatcaacattagtataatgtttgtattaaatattttgttatttgtatgcaaaacaccgttaaatatttgca 3419995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 17762180 - 17762113
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    |||||| ||| |||||||||||| | ||||||||||| |||||||||||||| | || ||||||||||    
T  17762180 atatgataaaattttgaaaactcgtgactattttcaaaatatcaacattaatgttgtctttctattaa 17762113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 1832982 - 1832902
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaaca 311  Q
    ||||||||||||||||||||||| || ||||||||| ||| | ||||||  ||||||||| |||| |||||||||||||||||    
T  1832982 ttttgaaaactcataactatttt-aaaatatcaacactaa-taagtgttcttattaaatattttttattttatatggaaaaca 1832902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 37447741 - 37447803
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttct 281  Q
    |||||| ||| ||||||| |||||| || |||||||| |||||||||||||| ||||||||||    
T  37447741 atatgataaaattttgaacactcatgaccattttcaaaatatcaacattaatgtagtgtttct 37447803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 40318448 - 40318368
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaaca 311  Q
    ||||||||||||||||||||||| || ||||||||| ||| | ||||||  ||||||||| |||| |||||||||||||||||    
T  40318448 ttttgaaaactcataactatttt-aaaatatcaacactaa-taagtgttcttattaaatattttttattttatatggaaaaca 40318368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 41409092 - 41409172
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaaca 311  Q
    ||||||||||||||||||||||| || ||||||||| ||| | ||||||  ||||||||| |||| |||||||||||||||||    
T  41409092 ttttgaaaactcataactatttt-aaaatatcaacactaa-taagtgttcttattaaatattttttattttatatggaaaaca 41409172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 17762875 - 17762794
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||||||||||| | ||||||||| ||  ||| |||||| ||||||||||||||||||  |||| |||||||||| ||||||    
T  17762875 ttttgaaaactcatgagtattttcaaaat--caaaattaatgtagtgtttctattaaataactttttattttatatgcaaaaca 17762794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 41912768 - 41912704
Alignment:
Q  205 tttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaat 270  Q
    ||||| || |||| ||||||||||||||||||||||  | |||||||||||||||| |||||||||    
T  41912768 tttttaatgtatcgatatgagaaagttttgaaaacttgtgactattttcaacatat-aacattaat 41912704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 17694106 - 17694034
Alignment:
Q  220 tatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 292  Q
    ||||| ||| |||| ||||||| ||| |||||| || |||||||||||| | ||||||| |||||||||||||    
T  17694106 tatgataaaattttaaaaactcgtaattatttttaaaatatcaacattagtatagtgttgctattaaatattt 17694034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 22554820 - 22554745
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 303  Q
    ||||| |||||| | |||||||| || |||||||||||||| |||||| ||||||||||  ||||| |||||||||    
T  22554820 ttttggaaactcgtgactatttttaaaatatcaacattaatgtagtgtgtctattaaataaatttttattttatat 22554745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 12048740 - 12048810
Alignment:
Q  257 atatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatatttg 325  Q
    |||||||||| ||| ||||||||||||||||||  |||| |||||||||  |||||| ||| |||||||||    
T  12048740 atatcaacatcaatgtagtgtttctattaaataactttttattttatatttaaaacaccgttaaatatttg 12048810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 21118412 - 21118353
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||| |||||| || | ||||||||| ||||||| ||||||||| |||||||||||||||    
T  21118412 tttttaaaactaatgattattttcaaaatatcaaaattaatttaatgtttctattaaata 21118353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 54248 - 54194
Alignment:
Q  234 gaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 288  Q
    ||||||| |||  |||||| || |||| |||||||||||||||||||||||||||    
T  54248 gaaaacttatagatatttttaaaatattaacattaatttagtgtttctattaaat 54194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 17694253 - 17694197
Alignment:
Q  257 atatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||||||||||| |||||||| |||||||||  |||| |||||||||| ||||||    
T  17694253 atatcaacattaatgtagtgtttatattaaatatttttttattttatatgtaaaaca 17694197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 21117630 - 21117522
Alignment:
Q  221 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaa 318  Q
    |||| ||| |||| ||||||||  ||||||||||| |||||||||| ||| |||| |||| ||||||||   ||| |||||||||  |||||| ||  ||    
T  21117630 atgataaaattttaaaaactcacgactattttcaaaatatcaacatcaatgtagtatttcaattaaataacattttattttatatttaaaacaccgataa 21117531  T
Q  319 atatttgca 327  Q
    |||||||||    
T  21117530 atatttgca 21117522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 22554306 - 22554269
Alignment:
Q  249 ttttcaacatatcaacattaatttagtgtttctattaa 286  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  22554306 ttttcaaaatatcaacattaatgtagtgtttctattaa 22554269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 3419886 - 3419811
Alignment:
Q  231 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatg 304  Q
    |||||||| |||| |||||||| || ||||||| ||||||  | |||||||||||||||  |||| ||||||||||    
T  3419886 tttgaaaattcatgactatttttaaaatatcaatattaatgcaatgtttctattaaatagctttttattttatatg 3419811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 22555165 - 22555121
Alignment:
Q  245 actattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||||| || |||||||||||||| |||||| |||||||||||    
T  22555165 actatttttaaaatatcaacattaatgtagtgtgtctattaaata 22555121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 40373866 - 40373794
Alignment:
Q  221 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||| |||||||||||||||| |   ||||||||| ||||||| |||||| | | |||| |||||||||||||    
T  40373866 atgataaagttttgaaaactcgtcgttattttcaaaatatcaaaattaatgtcgagtttatattaaatatttt 40373794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 1102328 - 1102398
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||| ||| ||||  |||||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  1102328 atatgataaaattttagaaactcataactattttcaaaatatcaacattaatgtagtgtgtctattaaata 1102398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 3142476 - 3142558
Alignment:
Q  188 tatatatgaagaatcaatttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaat 270  Q
    ||||||||  ||| |||||||| || |||| || |||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  3142476 tatatatggggaagcaattttttatgtatcgatctgagaatgttttgaaaactcatgactattttcaacatatcaacgttaat 3142558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 30081626 - 30081519
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 316  Q
    |||||| ||| ||||| |||||||| |||||||| || |||||||||||||| | |||||| |||||||||  |||| |||||||||  |||||| |||     
T  30081626 atatgataaaattttggaaactcatgactattttgaaaatatcaacattaatgtcgtgtttatattaaataactttttattttatatttaaaacaccgtt 30081527  T
Q  317 aaatattt 324  Q
    ||||||||    
T  30081526 aaatattt 30081519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 7165562 - 7165500
Alignment:
Q  228 agttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 290  Q
    ||||||||||||| ||||||||||| |  ||||| |||||||| |||||||||||||||||||    
T  7165562 agttttgaaaactaataactatttttataatatctacattaatgtagtgtttctattaaatat 7165500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 8494242 - 8494310
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 287  Q
    |||||| ||||||| ||||||| ||||||||||| || |||| ||||||||| |||| |||||||||||    
T  8494242 atatgataaagtttcgaaaactaataactatttttaaaatataaacattaatgtagtatttctattaaa 8494310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 20126209 - 20126269
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 290  Q
    |||| |||| |||| ||||||||||| |||||||||| ||| |||||||||||||||||||    
T  20126209 ttttaaaaattcatgactattttcaaaatatcaacatcaatgtagtgtttctattaaatat 20126269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 4144981 - 4145067
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 303  Q
    |||||| ||| || ||||||||||| | ||||||||| |||| ||||||||| ||||||||||||| |||  ||||| |||||||||    
T  4144981 atatgataaaattgtgaaaactcattaatattttcaaaatataaacattaatatagtgtttctattgaataaatttttattttatat 4145067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 31720862 - 31720941
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 309  Q
    |||||||||||||| ||||||||||| ||  ||| |||||| ||||||||||||||||||  |||| |||||||||| ||||    
T  31720862 ttttgaaaactcatcactattttcaaaat--caaaattaatgtagtgtttctattaaataactttttattttatatgcaaaa 31720941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 37834445 - 37834538
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaaca 311  Q
    |||||| ||| |||||||||||||  ||||||||||| ||||||| |||||| |||| ||||||||||||  ||||| ||||||| || ||||||    
T  37834445 atatgataaaattttgaaaactcaagactattttcaa-atatcaaaattaatgtagtttttctattaaataaatttttattttatttgcaaaaca 37834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 4160961 - 4161026
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctatt 284  Q
    |||||| ||| || ||||||||||| | ||||||||| |||| ||||||||| |||||||||||||    
T  4160961 atatgataaaattgtgaaaactcattaatattttcaaaatataaacattaatatagtgtttctatt 4161026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 495180 - 495262
Alignment:
Q  247 tattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatatttgca 327  Q
    ||||||||  |||||||||| ||| ||||||||||||||||||  |||| |||||||||  |||| | ||| |||||||||||    
T  495180 tattttcagaatatcaacatcaatgtagtgtttctattaaataactttttattttatatttaaaataccgttaaatatttgca 495262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 4161146 - 4161232
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 303  Q
    |||||| ||| || ||||||||||| | ||||||||| | || ||||||||| ||||||||||||| |||  ||||| |||||||||    
T  4161146 atatgataaaattgtgaaaactcattaatattttcaaaagataaacattaatatagtgtttctattgaataaatttttattttatat 4161232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 12946498 - 12946607
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 316  Q
    |||||| ||| |||| ||||| ||| | ||||||||| ||||||| |||| | |||| |||||||||||||  |||| ||||||||| ||||||| | |     
T  12946498 atatgataaaattttaaaaacacattattattttcaaaatatcaaaattattgtagtatttctattaaataagttttaattttatat-gaaaacaccttt 12946596  T
Q  317 aaatatttgca 327  Q
    |||||||||||    
T  12946597 aaatatttgca 12946607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 13698497 - 13698423
Alignment:
Q  231 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 303  Q
    ||||||||||||| || |||||||| |||||||||||||| | || | ||||||||||  ||||| |||||||||    
T  13698497 tttgaaaactcatgacaattttcaaaatatcaacattaatgttgtttgtctattaaattaattttcattttatat 13698423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 27532376 - 27532317
Alignment:
Q  218 catatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgt 277  Q
    ||||||| ||| |||||||||||||| | |||||| || |||||||||||||| ||||||    
T  27532376 catatgataaaattttgaaaactcatgattatttttaaaatatcaacattaatatagtgt 27532317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 494645 - 494722
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 311  Q
    |||||||| | |||| |||| |||| ||||||||| ||||||||||||| ||||  |||| |||||||||| ||||||    
T  494645 aaactcattaatattgtcaaaatataaacattaatatagtgtttctattgaataactttttattttatatgcaaaaca 494722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 20106083 - 20105992
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat-attttgattttatatggaaaaca 311  Q
    |||||| ||| ||||||||||| || ||||||| ||| ||||||||||||| | ||||||  |||||||| ||||| |||||||||| ||||||    
T  20106083 atatgataaaattttgaaaacttatgactattt-caaaatatcaacattaa-taagtgttcttattaaataatttttattttatatgaaaaaca 20105992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 20126414 - 20126467
Alignment:
Q  251 ttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatg 304  Q
    ||||| ||||| |||| ||| |||||||| ||||||||||||| ||||||||||    
T  20126414 ttcaaaatatcgacatcaatgtagtgtttttattaaatatttttattttatatg 20126467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 3142158 - 3142234
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaa-cattaatttagtgtttctattaaatattttg 294  Q
    |||||| ||| |||||||||||| | ||||||||||| |||||||   ||||| |||  ||||||||||||||||||    
T  3142158 atatgataaaattttgaaaactcgtgactattttcaaaatatcaatgtttaatgtagcatttctattaaatattttg 3142234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 3142380 - 3142412
Alignment:
Q  261 caacattaatttagtgtttctattaaatatttt 293  Q
    |||||||||| ||||||||||||||||||||||    
T  3142380 caacattaatgtagtgtttctattaaatatttt 3142412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 25810475 - 25810419
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    |||| ||||||| | ||||||||||| ||||||||||||||  | ||||||||||||    
T  25810475 ttttaaaaactcgttactattttcaaaatatcaacattaatgcaatgtttctattaa 25810419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 34913635 - 34913708
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 292  Q
    |||||| ||| |||| ||||| ||  ||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  34913635 atatgataaaattttaaaaacccaagactatttacaaaatatcaacattaatttattgtttctattaaatattt 34913708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 25699345 - 25699301
Alignment:
Q  257 atatcaacattaatttagtgtttctattaaatattttgattttat 301  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  25699345 atatcaacattaatatagtgtttctattaaatatttttattttat 25699301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 13004108 - 13004036
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 293  Q
    |||||| ||| |||| ||||||||||| |||||||| |||||||  |||||| || |||||||||||||||||||    
T  13004108 atatgataaaattttaaaaactcataagtattttcagcatatca--attaatataatgtttctattaaatatttt 13004036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 42498982 - 42499089
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtca 317  Q
    |||||| ||| |||| |||| || ||||||||||||| |||||| ||||||| || || |||||||||||| |||| |||||||||  |||| | ||| |    
T  42498982 atatgataaaattttaaaaattcgtaactattttcaaaatatcatcattaatataatgattctattaaatattttttattttatatacaaaatatcgtaa 42499081  T
Q  318 aatatttg 325  Q
    ||||||||    
T  42499082 aatatttg 42499089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 36648068 - 36648177
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatt-ttgattttatatggaaaacaacgtca 317  Q
    |||||| ||| |||| |||||| |  ||||||||||| |||||||||||||| |||  |||||||||||||||  | |||||| ||| |||||| |||      
T  36648068 atatgataaaattttaaaaacttacgactattttcaaaatatcaacattaatatagaatttctattaaatattccttattttacatgcaaaacaccgttg 36648167  T
Q  318 aatatttgca 327  Q
    ||||||||||    
T  36648168 aatatttgca 36648177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 6128112 - 6128176
Alignment:
Q  235 aaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgatttt 299  Q
    ||||||||| ||||||||||| | |||||||| | | |||||||| |||||||||||||| ||||    
T  6128112 aaaactcatgactattttcaaaacatcaacatcagtgtagtgtttttattaaatattttgttttt 6128176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 25699748 - 25699650
Alignment:
Q  188 tatatatgaagaatcaatttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 286  Q
    ||||| || |||| |||||||| || |||| |||||| ||| |||| |||||| || |||||||| | |||  || ||||||| |||||||||||||||    
T  25699748 tatatctggagaagcaattttttatgtatcgatatgataaaattttaaaaacttatgactatttttatcatgccatcattaatgtagtgtttctattaa 25699650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 34913778 - 34913835
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 287  Q
    ||||||| ||||| |||||||||||  ||||||| ||||||||| ||| |||||||||    
T  34913778 ttttgaacactcacaactattttcagaatatcaatattaatttaatgtctctattaaa 34913835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 25721833 - 25721726
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttg--attttatatggaaaacaacgtc 316  Q
    |||||| ||| | ||||||| | || ||||||||||| ||||||||||||||  || ||||  |||||||||||||  |||| ||||| |||||| |||     
T  25721833 atatgataaaatgttgaaaattgattactattttcaaaatatcaacattaatgaagagtttacattaaatattttgttatttcatatgtaaaacaccgtt 25721734  T
Q  317 aaatattt 324  Q
    | ||||||    
T  25721733 atatattt 25721726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 36647432 - 36647515
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctatt--aaatattttgattttatatggaaaaca 311  Q
    |||| |||||| |||||||||||| | |||| ||||||||| |  ||||||||||  | ||||||| |||||||||| ||||||    
T  36647432 tttttaaaacttataactattttcgaaatataaacattaatgtcatgtttctatttaatatatttttattttatatgcaaaaca 36647515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 36647938 - 36647990
Alignment:
Q  218 catatgagaaagttttgaaaactcataactattttcaacatatcaacattaat 270  Q
    ||||||| ||| ||||||||| | | |||||||||||| ||||||||||||||    
T  36647938 catatgataaaattttgaaaattaacaactattttcaaaatatcaacattaat 36647990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 654 - 584
Alignment:
Q  236 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatg 304  Q
    ||||| || ||||||||||| |||| ||||||||| ||||||||||||||||||  |||| ||||||||||    
T  654 aaactaatgactattttcaaaatataaacattaatgtagtgtttctattaaataactttttattttatatg 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 320 - 251
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 289  Q
    |||||| ||| |||||||||||| | |||||||||||  | ||||||||||| ||||||||||||||||||    
T  320 atatgataaaattttgaaaactcgtgactattttcaaact-tcaacattaatatagtgtttctattaaata 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 466 - 406
Alignment:
Q  245 actattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 303  Q
    ||||||||||| |||||||||||||| |||||| |||||| |||  ||||| |||||||||    
T  466 actattttcaaaatatcaacattaatgtagtgtgtctattgaataaatttttattttatat 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 77439 - 77534
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtcaaatattt 324  Q
    |||| ||||||||| |||| ||| || |||||||||||||| || ||||| ||||||||| |||| |||||||||| ||||||  || ||||||||    
T  77439 ttttaaaaactcatgactacttttaaaatatcaacattaatgtaatgtttttattaaatattttttattttatatgcaaaacattgtaaaatattt 77534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 1121 - 1231
Alignment:
Q  219 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 316  Q
    |||||| ||| | |||||||||||| |   ||||||| ||||| || ||||| ||||||||||||||||||  |||| |||||||||  |||| | |||     
T  1121 atatgataaaatattgaaaactcatgatcgttttcaaaatatctaccttaatctagtgtttctattaaataagtttttattttatattaaaaatatcgtt 1220  T
Q  317 aaatatttgca 327  Q
    |||||||||||    
T  1221 aaatatttgca 1231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 51160 - 51256
Alignment:
Q  230 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtcaaatatttg 325  Q
    |||| ||||| |||||||||||| || |||| ||||||||| ||||  || |||||| || |||| |||||||||| |||||  ||| |||||||||    
T  51160 ttttaaaaacccataactatttttaaaatattaacattaatgtagtagttttattaattattttttattttatatgtaaaacgccgttaaatatttg 51256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University