View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_high_2 (Length: 703)

Name: NF2057_high_2
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_high_2
NF2057_high_2
[»] chr7 (1 HSPs)
chr7 (11-685)||(41918652-41919326)


Alignment Details
Target: chr7 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 11 - 685
Target Start/End: Complemental strand, 41919326 - 41918652
Alignment:
Q  11 tgagatgaaaaaagtgagtatgaaatgagtccaacattaaatttgcacatgcaattgccggtattagcagaagagtagtaaaaggaggatgaagaagcac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41919326 tgagatgaaaaaagtgagtatgaaatgagtccaacattaaatttgcacatgcaattgccggtattagcagaagagtagtaaaaggaggatgaagaagcac 41919227  T
Q  111 tataagaataatgatgatatcaacaaccacaataattccaacaacggtgttgttgatgtgtaagacagcaatgctctttcaaatagtacacatgcatgtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41919226 tataagaataatgatgatatcaacaaccacaataattccaacaacggtgttgttgatgtgtaagacagcaatgctctttcaaatagtacacatgcatgtt 41919127  T
Q  211 tcaagcattgccctccataaataaatcaacaataataatggttggtcccgcacaaaatcttcaattattatctgataacattatacagcataaatttgga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41919126 tcaagcattgccctccataaataaatcaacaataataatggttggtcccgcacaaaatcttcaattattatctgataacattatacagcataaatttgga 41919027  T
Q  311 attgcacatataggccatagcaattctttatgtgaatattgtgtggcatttacggacactcctcggataatgcgggttcccgtgtcagatacatgccgtg 410  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||    
T  41919026 attgcacatataggccatagcaattctttatgtgaatagtgtgtggcatttacggacactcctcggataatgcgggtttccgtgtcagacacttgccgtg 41918927  T
Q  411 ttcgacaacgacataaataatcacttatgtaattttttaaaatttttagttgtatcagcatattagtgtctacatccgtgcgtcataaccatgtcttttc 510  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  41918926 ttcgacaacgacatatataatcacttatgtgattttttaaattttttagttgtgtcagcatattagtgtttacatccgtgcttcataaccatgtcttttc 41918827  T
Q  511 ctctaaatataattatctgtttccacactaagaagtggtaaagtgttgatcaaacttttcggccacaaaattacacagccaaaccatattatgctataaa 610  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41918826 ctctgaatataattatctgtttccacactaagaagtggtaaagtgttgatcaaacttttcggccacaaaattacacagccaaaccatattatgctataaa 41918727  T
Q  611 tgaataattagccagggtaatataatatggtacgtgaaaaccattattattttatatcatatcatgggcctcatg 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41918726 tgaataattagccagggtaatataatatggtacgtgaaaaccattattattttatatcatatcatgggcctcatg 41918652  T

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