View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_23 (Length: 370)
Name: NF2057_high_23
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 9216180 - 9215836
Alignment:
| Q |
11 |
cacagatattgattgccgttttataagagagcatgttaccggagacttcttgaaatcgatccatattctttcaaaacaccaattggcagatccacatata |
110 |
Q |
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| T |
9216180 |
cacagatattgattgccgttttataagagagcatgttaccagagacttcttgaaatcgatccatattctttcaaaacaccaattggccgatccacatata |
9216081 |
T |
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| Q |
111 |
caaagacttattgcataaaaacttatttcagtctctaattttcaagttgggaatataccttccaacatgagggaagtattgtttaagagtaattgttgta |
210 |
Q |
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| T |
9216080 |
caaagacttattgcataaaaacttatttcagtctctaattttcaggttgggaatataccttccaacatgaggggagtattgtttaagagtaattgttgta |
9215981 |
T |
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| Q |
211 |
caattcagttgatcataatgaaaaatgcatcttgcagtctcaaccaatttagaaaacatg---nnnnnnnnnnaaaatgtttctttattaaatgattcgt |
307 |
Q |
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| T |
9215980 |
caattcagttgatcataatgaaaaatgcatcttgcagtctcaaccaatttagaaaacatgtttttttttttttaaaatgtttctttattaaatgattcat |
9215881 |
T |
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| Q |
308 |
tcatagtatttgtagttccttgtatcctctaacttttcaatcaat |
352 |
Q |
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| T |
9215880 |
tcatagtatttgtagttccttgtatcctctaacttttcaatcaat |
9215836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 9217527 - 9217478
Alignment:
| Q |
210 |
acaattcagttgatcataatgaaaaatgcatcttgcagtctcaaccaattt |
260 |
Q |
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| T |
9217527 |
acaattcagttgatcatatttaaaa-tgcatcttgcagtgtcaaccaattt |
9217478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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