View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_24 (Length: 362)
Name: NF2057_high_24
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_24 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 34543491 - 34543835
Alignment:
| Q |
18 |
aatgaagctacacaaattgcaacaagaataccaaccactcaataatgaatgacagcaagcattaaaaagcaacaattacacaaccagataactagaggga |
117 |
Q |
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| T |
34543491 |
aatgaagctacacaaattgcaacaagaataccaaccactcaataatgaatgacagcaagcattaaaaagcaacaattacacaaccagataactagaggga |
34543590 |
T |
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| Q |
118 |
acctcaagtaatcaggctatgaaagaaattgagagttagaagagaaaacttgtcataatataggaatgacaatgttttaaagtctcaactaataatactc |
217 |
Q |
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| T |
34543591 |
acctcaagtaatcaggctatgaaagaaattgagagttagaagagaaaacttgtcataatataggaatgacaatgttttaaagtctcaactaataatactc |
34543690 |
T |
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| Q |
218 |
aagaagctaagatgttttgagaaagtatgagaattagtgctagtgaataataaatataatccaaatagctgaaactacataacagagttcaacttgatgc |
317 |
Q |
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| T |
34543691 |
aagaagctaagatgttttgagaaagtatgagaattagtgctagtgaataataaatataatccaaatagctgaaactacataacagagttcaacttgatgc |
34543790 |
T |
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| Q |
318 |
aaaaagaacagacaaagacatagaaaaaagctgagtgccatcttc |
362 |
Q |
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| T |
34543791 |
aaaaagaacagacaaagacatagaaaaaagctgagtgccatcttc |
34543835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 34914669 - 34914865
Alignment:
| Q |
34 |
ttgcaacaagaataccaaccactcaataatgaatgacagcaagcattaaaaagcaacaattacacaaccagataactagagggaacctcaagtaatcagg |
133 |
Q |
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| T |
34914669 |
ttgcaacaagaagaccaaccactcaatgatgaatgacaacaagcattaaaaagcaacaatcaaacaaccagatagctagagggaatctcaagttatcaag |
34914768 |
T |
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| Q |
134 |
ctatgaaagaaattgagagttagaagagaaaacttgtcataatataggaatgac-aatgttttaaagtctcaactaataatactcaagaagctaagatgt |
232 |
Q |
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| T |
34914769 |
ctatg-aagaaactgagagttagaag-----acttgtcaaaatataggaatgacaaacgtttt--agtctcaac---taatactcaacaaggtaaaatgt |
34914857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 34914921 - 34915018
Alignment:
| Q |
243 |
tatgagaattagtgctagtgaataataaatataatccaaatagctgaaactacataacagagttcaacttgatg--caaaaagaacagacaaagacata |
339 |
Q |
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| T |
34914921 |
tatgagaattagtgctagtgaataatagatgaaatccaaa-aactaaaactagataatagagttcaacttgatgtcaaaaaagaacagacaaagacata |
34915018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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