View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_high_27 (Length: 327)

Name: NF2057_high_27
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_high_27
NF2057_high_27
[»] chr7 (26 HSPs)
chr7 (1-211)||(6392061-6392270)
chr7 (212-315)||(6392467-6392572)
chr7 (212-314)||(4041143-4041247)
chr7 (212-316)||(31689352-31689457)
chr7 (212-315)||(40232114-40232219)
chr7 (212-314)||(27596086-27596190)
chr7 (212-297)||(24300171-24300258)
chr7 (212-315)||(22338164-22338269)
chr7 (212-297)||(29737601-29737688)
chr7 (221-316)||(25943647-25943742)
chr7 (234-305)||(22619970-22620041)
chr7 (212-286)||(41427676-41427752)
chr7 (122-209)||(3267629-3267716)
chr7 (123-178)||(19619993-19620048)
chr7 (253-314)||(7380535-7380596)
chr7 (122-209)||(26871771-26871858)
chr7 (118-176)||(34299795-34299853)
chr7 (243-280)||(21442834-21442871)
chr7 (235-271)||(38276588-38276624)
chr7 (122-174)||(44482905-44482957)
chr7 (281-315)||(40232382-40232416)
chr7 (122-210)||(8237950-8238038)
chr7 (118-178)||(24299181-24299241)
chr7 (235-279)||(30659432-30659476)
chr7 (122-178)||(43492252-43492308)
chr7 (122-174)||(46716179-46716231)
[»] chr2 (31 HSPs)
chr2 (212-314)||(45080420-45080522)
chr2 (212-314)||(2110416-2110520)
chr2 (212-314)||(29194184-29194288)
chr2 (212-316)||(30422588-30422694)
chr2 (212-315)||(28585682-28585787)
chr2 (212-315)||(43370870-43370975)
chr2 (212-314)||(8381316-8381420)
chr2 (234-314)||(31921621-31921701)
chr2 (212-297)||(4828106-4828193)
chr2 (239-314)||(25898806-25898880)
chr2 (216-315)||(43377207-43377308)
chr2 (215-313)||(1779073-1779173)
chr2 (118-210)||(6411392-6411484)
chr2 (235-286)||(27922606-27922657)
chr2 (237-283)||(9370597-9370643)
chr2 (122-210)||(29685722-29685810)
chr2 (212-305)||(39646313-39646410)
chr2 (122-210)||(9049168-9049256)
chr2 (122-210)||(12848490-12848578)
chr2 (122-210)||(565710-565800)
chr2 (237-279)||(16970377-16970419)
chr2 (122-176)||(33454968-33455022)
chr2 (122-207)||(8964392-8964477)
chr2 (122-178)||(24389673-24389729)
chr2 (122-178)||(25626948-25627004)
chr2 (241-280)||(18460605-18460644)
chr2 (212-283)||(42846942-42847013)
chr2 (233-278)||(9724987-9725032)
chr2 (122-178)||(6334722-6334778)
chr2 (255-315)||(20027065-20027125)
chr2 (235-279)||(24356222-24356266)
[»] chr5 (15 HSPs)
chr5 (212-315)||(42897373-42897478)
chr5 (212-315)||(36982382-36982487)
chr5 (234-316)||(14044275-14044357)
chr5 (237-314)||(5712639-5712716)
chr5 (212-314)||(36767876-36767980)
chr5 (237-315)||(2970665-2970743)
chr5 (212-299)||(33404425-33404514)
chr5 (122-210)||(10228319-10228406)
chr5 (122-209)||(14309106-14309193)
chr5 (118-209)||(36609150-36609241)
chr5 (132-178)||(39177691-39177737)
chr5 (122-178)||(4695072-4695128)
chr5 (121-178)||(38594981-38595038)
chr5 (122-178)||(17774332-17774388)
chr5 (122-158)||(31914170-31914206)
[»] chr4 (32 HSPs)
chr4 (212-314)||(39788189-39788293)
chr4 (212-314)||(40071449-40071553)
chr4 (212-315)||(17493949-17494054)
chr4 (212-314)||(54438157-54438261)
chr4 (212-311)||(33800786-33800887)
chr4 (220-314)||(20789876-20789972)
chr4 (212-314)||(37064753-37064857)
chr4 (212-316)||(10441529-10441633)
chr4 (212-315)||(51744518-51744623)
chr4 (212-314)||(34408657-34408761)
chr4 (212-314)||(47199682-47199786)
chr4 (212-315)||(925135-925240)
chr4 (221-315)||(21240531-21240627)
chr4 (212-313)||(28689666-28689767)
chr4 (122-210)||(53261558-53261646)
chr4 (235-316)||(32217935-32218016)
chr4 (212-316)||(3172018-3172124)
chr4 (241-315)||(41555682-41555756)
chr4 (122-202)||(49951716-49951796)
chr4 (239-283)||(52101273-52101317)
chr4 (133-195)||(23136540-23136602)
chr4 (212-277)||(28910195-28910262)
chr4 (127-209)||(39767212-39767294)
chr4 (122-178)||(36876107-36876163)
chr4 (120-176)||(45743313-45743369)
chr4 (118-158)||(48097948-48097988)
chr4 (212-316)||(46870801-46870907)
chr4 (122-209)||(49795145-49795231)
chr4 (235-285)||(35690568-35690618)
chr4 (118-159)||(19597219-19597260)
chr4 (122-158)||(2818359-2818395)
chr4 (243-283)||(35029154-35029194)
[»] chr3 (21 HSPs)
chr3 (212-314)||(40496969-40497073)
chr3 (212-314)||(41346243-41346347)
chr3 (212-314)||(51545858-51545962)
chr3 (212-316)||(13542790-13542896)
chr3 (220-317)||(48169928-48170027)
chr3 (217-314)||(50676674-50676773)
chr3 (212-316)||(54014433-54014539)
chr3 (212-286)||(24709206-24709282)
chr3 (122-210)||(48551040-48551128)
chr3 (237-312)||(48737749-48737824)
chr3 (212-315)||(30462864-30462968)
chr3 (125-209)||(25317808-25317892)
chr3 (122-178)||(12140145-12140201)
chr3 (122-209)||(45757929-45758016)
chr3 (122-176)||(16678924-16678978)
chr3 (122-176)||(24313551-24313605)
chr3 (281-314)||(12568275-12568308)
chr3 (281-314)||(13544739-13544772)
chr3 (281-314)||(40496773-40496806)
chr3 (133-177)||(28691975-28692019)
chr3 (122-178)||(29612020-29612076)
[»] chr1 (37 HSPs)
chr1 (212-314)||(1929217-1929321)
chr1 (212-314)||(50777193-50777297)
chr1 (212-315)||(46862752-46862857)
chr1 (212-315)||(46371117-46371222)
chr1 (212-311)||(39150900-39151001)
chr1 (234-318)||(28036696-28036780)
chr1 (212-316)||(32046029-32046135)
chr1 (212-315)||(40562435-40562540)
chr1 (212-279)||(38321841-38321910)
chr1 (212-312)||(8229259-8229362)
chr1 (237-315)||(1207451-1207529)
chr1 (235-315)||(9129400-9129480)
chr1 (122-210)||(40286858-40286946)
chr1 (122-210)||(48947204-48947292)
chr1 (122-177)||(24034057-24034112)
chr1 (122-178)||(290899-290955)
chr1 (122-178)||(35259096-35259152)
chr1 (235-318)||(6552126-6552209)
chr1 (122-209)||(16113919-16114006)
chr1 (123-209)||(48905-48991)
chr1 (122-176)||(31043001-31043055)
chr1 (122-176)||(39973892-39973946)
chr1 (118-176)||(40053289-40053347)
chr1 (128-209)||(51904588-51904669)
chr1 (122-210)||(33791757-33791845)
chr1 (122-178)||(35543453-35543509)
chr1 (235-283)||(36326154-36326202)
chr1 (122-208)||(26700249-26700335)
chr1 (122-176)||(31807832-31807886)
chr1 (122-176)||(42573821-42573875)
chr1 (239-276)||(20986544-20986581)
chr1 (132-176)||(290601-290645)
chr1 (118-150)||(5417704-5417736)
chr1 (235-283)||(9590625-9590673)
chr1 (278-318)||(26544093-26544133)
chr1 (235-283)||(27209916-27209964)
chr1 (122-178)||(34861262-34861318)
[»] chr8 (30 HSPs)
chr8 (212-316)||(38069893-38069999)
chr8 (212-315)||(17493722-17493827)
chr8 (212-315)||(18575224-18575329)
chr8 (212-315)||(27820969-27821074)
chr8 (212-314)||(39907104-39907208)
chr8 (212-314)||(11254696-11254800)
chr8 (212-315)||(11147845-11147950)
chr8 (212-314)||(9753965-9754069)
chr8 (237-315)||(12738365-12738443)
chr8 (122-210)||(12002267-12002355)
chr8 (212-286)||(13243575-13243651)
chr8 (122-209)||(14016886-14016973)
chr8 (122-193)||(20522944-20523015)
chr8 (235-280)||(29638412-29638457)
chr8 (117-178)||(30158112-30158173)
chr8 (120-177)||(32271168-32271225)
chr8 (122-174)||(38019472-38019524)
chr8 (122-209)||(1876501-1876588)
chr8 (212-291)||(17335994-17336074)
chr8 (149-210)||(36907827-36907888)
chr8 (122-177)||(2376779-2376834)
chr8 (233-280)||(5878176-5878223)
chr8 (118-209)||(30486605-30486696)
chr8 (124-195)||(44220743-44220814)
chr8 (120-158)||(25382620-25382658)
chr8 (118-152)||(36176694-36176728)
chr8 (122-176)||(39594541-39594595)
chr8 (133-178)||(11533243-11533288)
chr8 (122-158)||(20279625-20279661)
chr8 (122-158)||(21066252-21066288)
[»] chr6 (18 HSPs)
chr6 (212-314)||(12350468-12350572)
chr6 (212-305)||(29182787-29182882)
chr6 (212-314)||(16435975-16436075)
chr6 (212-314)||(28541587-28541691)
chr6 (212-312)||(13042167-13042268)
chr6 (212-314)||(30736615-30736719)
chr6 (235-291)||(13210562-13210618)
chr6 (212-314)||(1241304-1241408)
chr6 (212-283)||(7271109-7271182)
chr6 (237-314)||(31013495-31013572)
chr6 (122-176)||(3753147-3753201)
chr6 (118-178)||(29716815-29716875)
chr6 (239-283)||(31833622-31833666)
chr6 (122-176)||(3769370-3769424)
chr6 (122-210)||(354597-354685)
chr6 (122-177)||(13445782-13445837)
chr6 (281-315)||(13041971-13042005)
chr6 (280-316)||(24825163-24825199)
[»] scaffold0047 (2 HSPs)
scaffold0047 (212-315)||(69949-70054)
scaffold0047 (281-315)||(69752-69786)
[»] scaffold0519 (1 HSPs)
scaffold0519 (212-314)||(10593-10697)
[»] scaffold0061 (1 HSPs)
scaffold0061 (212-315)||(10016-10121)
[»] scaffold0016 (1 HSPs)
scaffold0016 (212-315)||(92168-92273)
[»] scaffold0318 (1 HSPs)
scaffold0318 (234-311)||(16564-16641)
[»] scaffold0532 (1 HSPs)
scaffold0532 (218-317)||(4016-4117)
[»] scaffold1194 (1 HSPs)
scaffold1194 (221-314)||(1173-1267)
[»] scaffold0010 (1 HSPs)
scaffold0010 (122-176)||(26701-26755)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6392061 - 6392270
Alignment:
Q  1 atcatgtttcaagtttgcatagaccaatttcatagtgaaatctcttgttgtaaatacctaacaatttcatttctttatcatcttcttcatcaatatattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6392061 atcatgtttcaagtttgcatagaccaatttcatagtgaaatctcttgttgtaaatacctaacaacttcatttctttatcatcttcttcatcaatatattt 6392160  T
Q  101 ttcttttggtcttgttaactttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagattt 200  Q
    || |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||    
T  6392161 tt-tttttgtcttgttaactctttaagcattctaaattaagaaattattctttcaaaacttaaaagttttcaatttccgttgcatcaattacacagactt 6392259  T
Q  201 ttataaaaaga 211  Q
    |||||||||||    
T  6392260 ttataaaaaga 6392270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 6392467 - 6392572
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6392467 aagggcaacttagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtaaaatatgtcacttattcaaggacggagg 6392566  T
Q  310 gagtat 315  Q
    ||||||    
T  6392567 gagtat 6392572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 4041143 - 4041247
Alignment:
Q  212 aaggacaactcagtaaaagtatctctc--tttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  4041143 aaggacaactcagtaaaagtatcactccctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattaagggacggagg 4041242  T
Q  310 gagta 314  Q
    |||||    
T  4041243 gagta 4041247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 31689457 - 31689352
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||    
T  31689457 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtgaaatatgtcacttatttagggacgg-gg 31689359  T
Q  310 gagtata 316  Q
    |||||||    
T  31689358 gagtata 31689352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 40232219 - 40232114
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| | |||||||||    
T  40232219 aagggcaactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattaagggacggagg 40232120  T
Q  310 gagtat 315  Q
    ||||||    
T  40232119 gagtat 40232114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 27596190 - 27596086
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||| |||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||    
T  27596190 aagggcaacccagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtaaaatggtcaaataagtcacttatttagggacggagg 27596091  T
Q  310 gagta 314  Q
    |||||    
T  27596090 gagta 27596086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 24300258 - 24300171
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttatt 297  Q
    |||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24300258 aagggcaactcagtaaaagtatcactctctttctttcatcttcacacttttcttaatctgtgtgaaatggtcaaatatgtcacttatt 24300171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 22338164 - 22338269
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| | |||||||||    
T  22338164 aagggcaattcagtaaaaatatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggttaagtaggtcacttatttagggacggagg 22338263  T
Q  310 gagtat 315  Q
    ||||||    
T  22338264 gagtat 22338269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 29737601 - 29737688
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttatt 297  Q
    |||| ||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29737601 aagggcaactcagtaaaagtatcactctctttcttttatttttacacttttcttaatctgtgtgaaatggtcaaataagtcacttatt 29737688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 25943742 - 25943647
Alignment:
Q  221 tcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtata 316  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||||||||  ||||| ||||||| |||||||||||| ||||||||||||||||    
T  25943742 tcagtaaaagtatcactctctttctttcatctttacaattttcttaatctgtg--aaatgatcaaataggtcacttattcagggacggagggagtata 25943647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 22619970 - 22620041
Alignment:
Q  234 ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||    
T  22619970 ctctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaagtaggtcacttattcagggacg 22620041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 41427752 - 41427676
Alignment:
Q  212 aaggacaactcagtaaaagtat--ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaata 286  Q
    |||| ||| ||| |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  41427752 aagggcaattcaataaaagtattactctctttctttcatctttacactttttttaatctgtgtgaaatgatcaaata 41427676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 3267716 - 3267629
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    ||||||||| |||||| ||| ||||||||||| ||||||||||||||||| |||| |  |||||  |||||||| | |||||||||||    
T  3267716 tttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttccattttcaatgcactcattacacaaacttttataaaaa 3267629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 19619993 - 19620048
Alignment:
Q  123 ttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||    
T  19619993 ttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaatttcc 19620048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 7380596 - 7380535
Alignment:
Q  253 acacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    |||||||| |||||||||||||||||||||| ||  |||||||||||| |||||||| ||||    
T  7380596 acactttttttaatctgtgtgaaatggtcaagtagatcacttattcaaagacggaggaagta 7380535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 26871771 - 26871858
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    ||||||||| |||||| ||| ||||||||||| |||||||||||||||| ||||| | ||  ||  |||||||| | |||||||||||    
T  26871771 tttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttgaattttcattatactgattacacaaacttttataaaaa 26871858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 34299853 - 34299795
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||| | ||||||||||||||    
T  34299853 actttttaagcatgctagattaagcaattattctttaaaaatgtcaaagttttcaattt 34299795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 21442871 - 21442834
Alignment:
Q  243 tttcatctttacacttttcttaatctgtgtgaaatggt 280  Q
    |||||||||||||||||||||||||||| |||||||||    
T  21442871 tttcatctttacacttttcttaatctgtatgaaatggt 21442834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 38276624 - 38276588
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtg 271  Q
    |||||||||||||||||||| ||||||||||||||||    
T  38276624 tctctttctttcatctttactcttttcttaatctgtg 38276588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 44482905 - 44482957
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaat 174  Q
    |||||| || |||||| ||| |||| |||||||||||||||||||||||||||    
T  44482905 tttaagtatgctaaataaagtaatttttctttcaaaatttaaaagttttcaat 44482957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 40232382 - 40232416
Alignment:
Q  281 caaatatgtcacttattcaaggacggagggagtat 315  Q
    |||||| ||||||||||||||||||||||||||||    
T  40232382 caaataggtcacttattcaaggacggagggagtat 40232416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 8237950 - 8238038
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    |||||| || |||||||||| ||||||||||| ||||| | |||||||||| ||| |  |||||  |||||||| | ||| ||||||||    
T  8237950 tttaagtatactaaattaagtaattattctttaaaaatgtcaaagttttcatttttcaatgcactgattacacaaactttcataaaaag 8238038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 24299241 - 24299181
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||||||||||  |||||||||||||||||| || ||||| | ||| |||| |||||||    
T  24299241 actttttaagcatgttaaattaagaaattattccttaaaaatgtcaaattttttaatttcc 24299181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 30659476 - 30659432
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatgg 279  Q
    ||||| |||||| | | ||||||||||||||||||||||||||||    
T  30659476 tctctctctttcctttgtacacttttcttaatctgtgtgaaatgg 30659432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 43492308 - 43492252
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||||||||||||||||| |||||||||||  |||| | ||| ||| ||||||||    
T  43492308 tttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttcc 43492252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 46716179 - 46716231
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaat 174  Q
    ||||| |||||||||||||  ||||||||||| ||||| | ||||||||||||    
T  46716179 tttaaccattctaaattaaataattattctttaaaaatatcaaagttttcaat 46716231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 45080522 - 45080420
Alignment:
Q  212 aaggacaactcagtaaaagtatctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggaggga 311  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  45080522 aagggcaactcagtaaaagtatcactctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggaggga 45080423  T
Q  312 gta 314  Q
    |||    
T  45080422 gta 45080420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 2110416 - 2110520
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |    
T  2110416 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaaatatgtcacttattcagggacggaag 2110515  T
Q  310 gagta 314  Q
    |||||    
T  2110516 gagta 2110520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 29194184 - 29194288
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  29194184 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttgtgtgaaatggtcaaataggtcacttattcagggacggagg 29194283  T
Q  310 gagta 314  Q
    |||||    
T  29194284 gagta 29194288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 30422588 - 30422694
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  30422588 aagggcaactcagtaaaagtatcactctctttctttcatcgttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagcgacggagg 30422687  T
Q  310 gagtata 316  Q
    |||||||    
T  30422688 gagtata 30422694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 28585787 - 28585682
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |    
T  28585787 aagggcaactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggatg 28585688  T
Q  310 gagtat 315  Q
    ||||||    
T  28585687 gagtat 28585682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 43370870 - 43370975
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  43370870 aagggcaactcagtaaaagtatcactctctttcttttatttttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagg 43370969  T
Q  310 gagtat 315  Q
    ||||||    
T  43370970 gagtat 43370975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 8381420 - 8381316
Alignment:
Q  212 aaggacaactcagtaaaagtatctctct--ttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  8381420 aagggcaactcagtaaaagtatcactctatttctttcatctttacatttttcttaatctgtgtgaaatggtcaaatagatcacttattcagggacggagg 8381321  T
Q  310 gagta 314  Q
    |||||    
T  8381320 gagta 8381316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 31921701 - 31921621
Alignment:
Q  234 ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  31921701 ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattcagggacggagggagta 31921621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 4828193 - 4828106
Alignment:
Q  212 aaggacaactcagtaaaagtatctctcttt--ctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttatt 297  Q
    |||| |||||||||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4828193 aagggcaactcagtaaaagtatcactctttttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttatt 4828106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 25898806 - 25898880
Alignment:
Q  239 tttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||| | ||||||||||||    
T  25898806 tttctttcatctttacactcttcttaatctgtgtgaaatggtcaagta-gtcacttattcaggaacggagggagta 25898880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 43377308 - 43377207
Alignment:
Q  216 acaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagt 313  Q
    |||| ||||||||||||||  | |||||||||||||||||||||||||||||| ||| ||||||||| |  || ||||  |||| |||||||||||||||    
T  43377308 acaattcagtaaaagtatcattttctttctttcatctttacacttttcttaatttgtttgaaatggttatgtaggtcaagtattgaaggacggagggagt 43377209  T
Q  314 at 315  Q
    ||    
T  43377208 at 43377207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 1779173 - 1779073
Alignment:
Q  215 gacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggag 312  Q
    ||||| ||||||||| ||||  | |||||||||||||||||||||||||||||||| |||||||||||||| || ||||  |||| | ||||||| ||||    
T  1779173 gacaattcagtaaaaatatcattatctttctttcatctttacacttttcttaatctatgtgaaatggtcaagtaagtcaagtattgagggacggaaggag 1779074  T
Q  313 t 313  Q
    |    
T  1779073 t 1779073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 6411484 - 6411392
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||| ||| |||||| ||| ||||||||||| ||||||||||||||||||||||||  || ||  |||||||| | ||||||||||||    
T  6411484 actttttaaacatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatgtactgattacacatacttttataaaaag 6411392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 27922657 - 27922606
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaata 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27922657 tctctttctttcatctttacacttttcttaatatgtgtgaaatgatcaaata 27922606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 9370597 - 9370643
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  9370597 tctttttttcatctttacacttttcttaatctgtgtgaaatggtcaa 9370643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 29685810 - 29685722
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||| ||| |||||| ||| |||||||||||||||||||||||||| ||||||| |   ||||| |||||||| |||||| |||||||    
T  29685810 tttaaacatgctaaataaagtaattattctttcaaaatttaaaagttctcaattttcaacgcaccgattacacaaatttttgtaaaaag 29685722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 305
Target Start/End: Complemental strand, 39646410 - 39646313
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacactttt--cttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacg 305  Q
    |||| ||| ||||||||| ||||  |||||||||||||| |||||| ||||  |||||||||| ||||||||||||||||||||  |||| |||||||    
T  39646410 aagggcaattcagtaaaaatatcattctctttctttcatttttacatttttttcttaatctgtatgaaatggtcaaatatgtcaagtattaaaggacg 39646313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 9049256 - 9049168
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    |||||||||  ||||||||| ||||||||||| ||||| | ||| |||||||||| |  ||||  ||||||||| ||||||||||||||    
T  9049256 tttaagcatgttaaattaagtaattattcttttaaaatgttaaatttttcaattttcaatgcattaattacacaaatttttataaaaag 9049168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 12848578 - 12848490
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    |||||||||  ||||||||| || |||||||| | ||| | |||||||||||||||| |||||| ||||||||| | ||| ||||||||    
T  12848578 tttaagcatattaaattaagtaactattctttaataatgtcaaagttttcaatttccattgcactaattacacaaactttcataaaaag 12848490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 565800 - 565710
Alignment:
Q  122 tttaagcattctaaattaag--aaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||| ||||||||||  ||| |||||||| ||||| | ||||||||||||||||  ||||| ||||||||| | ||| ||||||||    
T  565800 tttaagcatgctaaattaagtaaaagtattctttaaaaatgtgaaagttttcaatttcctatgcactaattacacaaactttcataaaaag 565710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 16970377 - 16970419
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatgg 279  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  16970377 tctttcttttatctttacacttttcttaatatgtgtgaaatgg 16970419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 33454968 - 33455022
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||||||| ||||||||||||| |||||||| ||||| | ||||||||||||||    
T  33454968 tttaagcatgctaaattaagaaactattctttaaaaatgtcaaagttttcaattt 33455022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 8964392 - 8964477
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaa 207  Q
    |||||||||||||||||||| ||||||||||| ||||  |||||  |||||||||||  ||||   |||||||| ||||| |||||    
T  8964392 tttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaa 8964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 24389729 - 24389673
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||||| |||||||||| ||||||||||| || || | ||||||||||||||||    
T  24389729 tttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaatttcc 24389673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 25626948 - 25627004
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||| ||||||||||||  ||||||||||| ||||||| ||||||||| ||||||    
T  25626948 tttaagtattctaaattaaataattattctttaaaaattttaaagttttcgatttcc 25627004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 18460605 - 18460644
Alignment:
Q  241 tctttcatctttacacttttcttaatctgtgtgaaatggt 280  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  18460605 tctttcatttatacacttttcttaatctgtgtgaaatggt 18460644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 42847013 - 42846942
Alignment:
Q  212 aaggacaactcagtaaaagtatctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    |||||||| | ||||||| ||||  ||| |||||||| ||| ||| |||| |||||||||||||||||||||    
T  42847013 aaggacaatttagtaaaaatatcattctctctttcatttttgcacctttcataatctgtgtgaaatggtcaa 42846942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 9724987 - 9725032
Alignment:
Q  233 tctctctttctttcatctttacacttttcttaatctgtgtgaaatg 278  Q
    ||||||| |||||||| | ||||||||||||||| |||||||||||    
T  9724987 tctctctctctttcatttatacacttttcttaatatgtgtgaaatg 9725032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 6334778 - 6334722
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||| ||| ||||||||| |||||||| ||| ||||| | ||||||||||||||||    
T  6334778 tttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaatttcc 6334722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 20027125 - 20027065
Alignment:
Q  255 acttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    |||||||||||| ||| |||||||  ||||||  ||||||| || ||||||||||||||||    
T  20027125 acttttcttaatatgtctgaaatgagcaaataactcacttaatctaggacggagggagtat 20027065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 24356222 - 24356266
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatgg 279  Q
    ||||| |||||| | | ||||||||||||||||||||||||||||    
T  24356222 tctctctctttcctttatacacttttcttaatctgtgtgaaatgg 24356266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 42897478 - 42897373
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  42897478 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggagg 42897379  T
Q  310 gagtat 315  Q
    ||||||    
T  42897378 gagtat 42897373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 36982382 - 36982487
Alignment:
Q  212 aaggacaactcagtaaaagtatctctcttt--ctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  36982382 aagggcaactcagtaaaagtatcactctttttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggagg 36982481  T
Q  310 gagtat 315  Q
    ||||||    
T  36982482 gagtat 36982487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 14044275 - 14044357
Alignment:
Q  234 ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtata 316  Q
    |||||||||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  14044275 ctctctttctttcatctttacacttttcttaatacgtgtgaaatgatcaaataggtcacttattcagggacggagggagtata 14044357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 5712639 - 5712716
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| || |||| ||||||| ||||||||||||||    
T  5712639 tctttctttcatctttacatttttcttaatctgtgtggaatggtcaagtaggtcatttattcagggacggagggagta 5712716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 36767980 - 36767876
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||| ||||||||| ||||  ||||||||||||||||||||||| || |||||||||||||| |||||||||| |||||||||||| ||| ||| |    
T  36767980 aagggcaattcagtaaaaatatcactctctttctttcatctttacactctttttaatctgtgtgaagtggtcaaataggtcacttattcagggagggacg 36767881  T
Q  310 gagta 314  Q
    |||||    
T  36767880 gagta 36767876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 2970743 - 2970665
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||  |||| | |||| ||||||||||    
T  2970743 tctttctttcatctttacatttttcttaatctgtgtgaaatggtcaagtaggtcaaatattgagggacagagggagtat 2970665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 33404425 - 33404514
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattca 299  Q
    |||| ||| ||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| ||||| |||| || ||||||||||||    
T  33404425 aagggcaattcagtaaaaatatcactctctttctttcatctttacatttttcttaatctgtgtaaaatgatcaagtaggtcacttattca 33404514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 10228319 - 10228406
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||| |||||   ||||||| | |||| |||||||    
T  10228319 tttaagcatgctaa-taaagtaattattctttcaaaatttaaaagttttcaatttccgatgcactggttacacaaacttttttaaaaag 10228406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 14309193 - 14309106
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    |||||||||  ||||||||| | ||||||||| ||||| | ||||||||||||||||  ||||  ||||||||| ||||| |||||||    
T  14309193 tttaagcatattaaattaagtagttattctttaaaaatatcaaagttttcaatttccaatgcattaattacacaaattttcataaaaa 14309106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 36609241 - 36609150
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    ||||||||| |||||||||||||  ||||||||||  ||||| | |||||||||||||| |  || || ||||||||| | |||||||||||    
T  36609241 actttttaaacattctaaattaaataattattcttcaaaaatatcaaagttttcaattttcaatgtactaattacacaaacttttataaaaa 36609150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 39177691 - 39177737
Alignment:
Q  132 ctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||||    
T  39177691 ctaaataaagtaattatcctttcaaaatttaaaagttttcaatttcc 39177737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 4695072 - 4695128
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||||| ||||||||| |||||||||||| ||||| | |||||||| |||||||    
T  4695072 tttaagcatgctaaattaaaaaattattctttaaaaatattaaagtttttaatttcc 4695128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 38595038 - 38594981
Alignment:
Q  121 ttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||| || |||||||||| ||||||||||| ||||| | ||| ||||||||||||    
T  38595038 ttttaagtatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttcc 38594981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 17774388 - 17774332
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||||||| ||||| ||| ||||||||||| ||||| | ||| ||||||||||||    
T  17774388 tttaagcattttaaatcaagtaattattctttaaaaatatcaaatttttcaatttcc 17774332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 31914170 - 31914206
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaa 158  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  31914170 tttaagcattctaaattaagtaattattctttaaaaa 31914206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 39788189 - 39788293
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||    
T  39788189 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacgaagg 39788288  T
Q  310 gagta 314  Q
    |||||    
T  39788289 gagta 39788293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 40071553 - 40071449
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  40071553 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagg 40071454  T
Q  310 gagta 314  Q
    |||||    
T  40071453 gagta 40071449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 17493949 - 17494054
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  17493949 aagggcaactcaataaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagg 17494048  T
Q  310 gagtat 315  Q
    ||||||    
T  17494049 gagtat 17494054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 54438261 - 54438157
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||    
T  54438261 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatcggtgtgaaatggtcaaataggtcacttatttagggacggagg 54438162  T
Q  310 gagta 314  Q
    |||||    
T  54438161 gagta 54438157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 33800887 - 33800786
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  33800887 aagggcaactcagtaaaagtatcactctctttcttccatctttacacttttctgaatctgtgtgaaatggtcaaataggtcacttattcagggacggagg 33800788  T
Q  310 ga 311  Q
    ||    
T  33800787 ga 33800786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 20789876 - 20789972
Alignment:
Q  220 ctcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  20789876 ctcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattcaggaacggagggagta 20789972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 37064857 - 37064753
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||| |    
T  37064857 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctatgtgaaatgatcaaataggtcacttattcagggacggatg 37064758  T
Q  310 gagta 314  Q
    |||||    
T  37064757 gagta 37064753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 10441529 - 10441633
Alignment:
Q  212 aaggacaactcagtaaaagtatctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggaggga 311  Q
    |||| ||| ||||||||| |||| |||||||||| |||||||||||| |||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  10441529 aagggcaattcagtaaaaatatcactctttcttttatctttacacttatcttaatctgtgtgaaatggtcaagtaggtcacttattcagggacggaggga 10441628  T
Q  312 gtata 316  Q
    |||||    
T  10441629 gtata 10441633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 51744623 - 51744518
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||| ||||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||     
T  51744623 aagggcaacttagtaaaagtatcactctctttctcacatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggaga 51744524  T
Q  310 gagtat 315  Q
    ||||||    
T  51744523 gagtat 51744518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 34408761 - 34408657
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||| ||||||||||  ||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| |||||||||    
T  34408761 aagggcaactcaataaaagtatcattctctttctttcatctttacacttttcctaatatgtgtgaaatggccaaataggtcacttattcagggacggagg 34408662  T
Q  310 gagta 314  Q
    |||||    
T  34408661 gagta 34408657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 47199682 - 47199786
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||||||    
T  47199682 aagggcaactcaataaaaatatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattcaggtacggagg 47199781  T
Q  310 gagta 314  Q
    |||||    
T  47199782 gagta 47199786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 925240 - 925135
Alignment:
Q  212 aaggacaactcagtaaaagtatctctct--ttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||||||| || |  |||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||    
T  925240 aagggcaactcagtaaaagtatcactttatttcttttatctttacacttttcttaatctgtgtgaaatgatcaaataagtcacttattaagggacggagg 925141  T
Q  310 gagtat 315  Q
    ||||||    
T  925140 gagtat 925135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 21240531 - 21240627
Alignment:
Q  221 tcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    ||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||  |||  | |||||||||||||||    
T  21240531 tcagtaaaaatatcattctctttctttcatctctacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtatcgagggacggagggagtat 21240627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 28689767 - 28689666
Alignment:
Q  212 aaggacaactcagtaaaagtatctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggaggga 311  Q
    |||| ||| ||||||||| ||||| | |||  |||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||| |||| ||||||    
T  28689767 aagggcaattcagtaaaaatatcttttttttcttcatctttacatttttcttaatctgtgtgaaatagtcaaatagatcacttattcagggacagaggga 28689668  T
Q  312 gt 313  Q
    ||    
T  28689667 gt 28689666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 53261558 - 53261646
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  ||||   |||||||| | ||||||||||||    
T  53261558 tttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgcagtgattacacaaacttttataaaaag 53261646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 32218016 - 32217935
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtata 316  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| || || |  |||| | |||||| |||||||||    
T  32218016 tctctttctttcatctttacactcttcttaatctgtgtgaaatggtcaagtaggtaaagtattgagggacggtgggagtata 32217935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 3172124 - 3172018
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||||||| ||||||||| ||||  | ||||| ||||||||||||| ||||||||||||||||||||||||||| ||  |||  |||| | ||||| |||    
T  3172124 aaggacaattcagtaaaaatatcattatctttttttcatctttacatttttcttaatctgtgtgaaatggtcaagtagatcaagtattgagggacgaagg 3172025  T
Q  310 gagtata 316  Q
    |||||||    
T  3172024 gagtata 3172018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 41555682 - 41555756
Alignment:
Q  241 tctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||||  ||||  |||| |||||||||||    
T  41555682 tctttcatctttacacttttcttaatctgtgtgaaatggccaagtaggtcaagtattgcaggatggagggagtat 41555756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 49951796 - 49951716
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagattttt 202  Q
    ||||||||| |||||||||| ||||||||||| ||||| | |||||||||||||| |  |||||| |||||||| ||||||    
T  49951796 tttaagcatgctaaattaagtaattattcttttaaaatgtcaaagttttcaattttcaatgcaccgattacacaaattttt 49951716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 52101273 - 52101317
Alignment:
Q  239 tttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  52101273 tttctttcatctttacacttttcttaatctgtgtgaaatagtcaa 52101317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 23136602 - 23136540
Alignment:
Q  133 taaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacaca 195  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||  |||||  ||||||||    
T  23136602 taaattaagtaattattcttttaaaatttaaaagttttcaatttccaatgcactgattacaca 23136540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 28910262 - 28910195
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaat 277  Q
    |||||||| ||||||||| ||||  |||||||||||||||||| || |||||||||||| ||||||||    
T  28910262 aaggacaattcagtaaaaatatcattctctttctttcatctttgcatttttcttaatctatgtgaaat 28910195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 39767212 - 39767294
Alignment:
Q  127 gcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    |||| |||||| ||| ||||||| |||||||||| ||||||||| |||||||  ||||  ||||||||| | |||||||||||    
T  39767212 gcatgctaaataaagtaattattttttcaaaattaaaaagtttttaatttccaatgcattaattacacaaacttttataaaaa 39767294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 36876163 - 36876107
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||||| |||||||||| || |||||||| ||||| |||| |||||||||||||    
T  36876163 tttaagcatgctaaattaagtaactattcttttaaaatgtaaatgttttcaatttcc 36876107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 45743313 - 45743369
Alignment:
Q  120 tttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    |||||||| ||  ||||||||||||||||||||| ||||| | ||||||||||||||    
T  45743313 tttttaagtatgttaaattaagaaattattctttaaaaatgtcaaagttttcaattt 45743369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 48097948 - 48097988
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaa 158  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  48097948 actttttaagtattctaaattaagaaattattctttaaaaa 48097988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 46870801 - 46870907
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||||| | ||||||||| ||||  ||||||||||||||| || ||||||| ||| | |||||||||| ||||| || ||||  |||| | |||||||||    
T  46870801 aaggactattcagtaaaaatatcattctctttctttcatccttgcactttttttactatgtgtgaaattgtcaagtaggtcaagtattgacggacggagg 46870900  T
Q  310 gagtata 316  Q
     ||||||    
T  46870901 aagtata 46870907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 49795145 - 49795231
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    ||||||||| |||||| ||| ||||||| ||| ||| ||||||| |||||||||| |  |||||| |||||||| | |||||||||||    
T  49795145 tttaagcatactaaataaagtaattatttttttaaa-tttaaaaattttcaattttcaatgcaccgattacacaaacttttataaaaa 49795231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 35690568 - 35690618
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaat 285  Q
    |||||||||||||| |||   |||||||||||||||||||||| |||||||    
T  35690568 tctctttctttcatttttcttcttttcttaatctgtgtgaaatcgtcaaat 35690618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 19597260 - 19597219
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaat 159  Q
    ||||||||||||||||| |||| ||||||||||||| |||||    
T  19597260 actttttaagcattctacattaggaaattattctttaaaaat 19597219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 2818359 - 2818395
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaa 158  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  2818359 tttaagcattttaaattaagaaattattcttttaaaa 2818395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 35029154 - 35029194
Alignment:
Q  243 tttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  35029154 tttcatttatacacttttcttaatctatgtgaaatggtcaa 35029194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 40496969 - 40497073
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  40496969 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagg 40497068  T
Q  310 gagta 314  Q
    |||||    
T  40497069 gagta 40497073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 41346243 - 41346347
Alignment:
Q  212 aaggacaactcagtaaaagtatctct--ctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  41346243 aagggcaactcagtaaaagtatcacttactttctttcatctttacacttttcttaatctgtgtgaaatagtcaaatatgtcacttattcagggacggagg 41346342  T
Q  310 gagta 314  Q
    |||||    
T  41346343 gagta 41346347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 51545858 - 51545962
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||     
T  51545858 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaaataggtcacttattcagggacggaga 51545957  T
Q  310 gagta 314  Q
    |||||    
T  51545958 gagta 51545962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 13542896 - 13542790
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||| |    
T  13542896 aagggcaactcagtaaaagtatcaatctctttctttcatctttacacttttcttaatctatatgaaatggtcaaataggtcacttattcagggacggatg 13542797  T
Q  310 gagtata 316  Q
    |||||||    
T  13542796 gagtata 13542790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 48169928 - 48170027
Alignment:
Q  220 ctcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtataa 317  Q
    |||||||| ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  48169928 ctcagtaatagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagtataa 48170027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 50676674 - 50676773
Alignment:
Q  217 caactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||    
T  50676674 caactcagtaaaaatatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagta 50676773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 54014433 - 54014539
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| | |||| ||||    
T  54014433 aagggcaactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggttacttattaagggacagagg 54014532  T
Q  310 gagtata 316  Q
    |||||||    
T  54014533 gagtata 54014539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 24709206 - 24709282
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaata 286  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24709206 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaata 24709282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 48551040 - 48551128
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||| |||||||||||||||||||||| ||||| | |||||||||||||| |  |||||| ||||||||  |||||||||||||    
T  48551040 tttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatgcaccgattacacaattttttataaaaag 48551128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 48737749 - 48737824
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggag 312  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||  |||| ||||||||||||||    
T  48737749 tctttctttcatctctacacttttcttaatctgtgtgaaattgtcaagtaggtcaagtattgaaggacggagggag 48737824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 30462864 - 30462968
Alignment:
Q  212 aaggacaactcagtaaaagtatctctct--ttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||| ||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||  ||||||| |    
T  30462864 aagggcaattcagtaaaaatatcactctatttctttcatctttatacttttcttaatctgtgtgaaatggtcaagtagatcacttattc-gggacggatg 30462962  T
Q  310 gagtat 315  Q
    ||||||    
T  30462963 gagtat 30462968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 25317808 - 25317892
Alignment:
Q  125 aagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    |||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||  |||| | |||||||| | |||||||||||    
T  25317808 aagcatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatgcatcgattacacaaacttttataaaaa 25317892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 12140145 - 12140201
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||||| |||||||||  ||||||||||| ||||| | ||||||||||||||||    
T  12140145 tttaagcatgctaaattaaataattattcttttaaaatgtcaaagttttcaatttcc 12140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 45757929 - 45758016
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    |||||||||  ||||||||| ||||||||||| ||||| | |||||||||||||| |  |||||  |||||||| | ||| |||||||    
T  45757929 tttaagcatgttaaattaagcaattattctttaaaaatgtcaaagttttcaatttacaatgcactgattacacaaactttcataaaaa 45758016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 16678924 - 16678978
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||| || ||||||| ||| ||||||||||| ||||| ||||||||||||||||    
T  16678924 tttaaacactctaaataaagtaattattcttttaaaatataaaagttttcaattt 16678978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 24313551 - 24313605
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||| |||||||||||||  ||||||||||| ||||| | ||||||||||||||    
T  24313551 tttaaacattctaaattaaacaattattctttaaaaatgtcaaagttttcaattt 24313605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 12568275 - 12568308
Alignment:
Q  281 caaatatgtcacttattcaaggacggagggagta 314  Q
    ||||||||||||||||||| ||||||||||||||    
T  12568275 caaatatgtcacttattcagggacggagggagta 12568308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 13544739 - 13544772
Alignment:
Q  281 caaatatgtcacttattcaaggacggagggagta 314  Q
    ||||||||||||||||||| ||||||||||||||    
T  13544739 caaatatgtcacttattcagggacggagggagta 13544772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 40496806 - 40496773
Alignment:
Q  281 caaatatgtcacttattcaaggacggagggagta 314  Q
    |||||| |||||||||||||||||||||||||||    
T  40496806 caaataggtcacttattcaaggacggagggagta 40496773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 28692019 - 28691975
Alignment:
Q  133 taaattaagaaattattctttcaaaatttaaaagttttcaatttc 177  Q
    ||||||||| ||||||||||| ||||| | |||||||||||||||    
T  28692019 taaattaagtaattattcttttaaaatgttaaagttttcaatttc 28691975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 29612020 - 29612076
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||| ||||||||| |||| ||||||||||| ||||| | | ||||||||||||||    
T  29612020 tttaaacattctaaaataagtaattattctttaaaaatgtgacagttttcaatttcc 29612076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 1929321 - 1929217
Alignment:
Q  212 aaggacaactcagtaaaagtatctctcttt--ctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  1929321 aagggcaactcagtaaaagtatcactctttttctttcatctttacacttttcttaatctgtgtgaaatgatcaaatatgtcacttattcagggacggagg 1929222  T
Q  310 gagta 314  Q
    |||||    
T  1929221 gagta 1929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 50777193 - 50777297
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  50777193 aagggcaactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagg 50777292  T
Q  310 gagta 314  Q
    |||||    
T  50777293 gagta 50777297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 46862752 - 46862857
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||| |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  46862752 aagggcaactcaggaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagg 46862851  T
Q  310 gagtat 315  Q
    ||||||    
T  46862852 gagtat 46862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 46371117 - 46371222
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| | |||||||||    
T  46371117 aagggcaattcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattaagggacggagg 46371216  T
Q  310 gagtat 315  Q
    | ||||    
T  46371217 gggtat 46371222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 39151001 - 39150900
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||| | |||||||||    
T  39151001 aagggcaactcagtaaaagtatcattctctttcttttatctttacatttttcttaatctgtgtgaaatggtcaaatagatcacttattaagggacggagg 39150902  T
Q  310 ga 311  Q
    ||    
T  39150901 ga 39150900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 28036780 - 28036696
Alignment:
Q  234 ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtataat 318  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| ||||||||||||    
T  28036780 ctctctttcttttatctttacacttttcttaatttgtgtgaaatggtcaaataagtcacttattaagggacgaagggagtataat 28036696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 32046029 - 32046135
Alignment:
Q  212 aaggacaactcagtaaaagtatctct--ctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||| ||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||  || |||||    
T  32046029 aagggcaactcggtaaaagtatcactttctttctttcatttttacacttttcttaatctgtgtgaaatggtcaaataaatcacttattcagtgatggagg 32046128  T
Q  310 gagtata 316  Q
    |||||||    
T  32046129 gagtata 32046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 40562540 - 40562435
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||| | |||||||||    
T  40562540 aagggcaattcagtaaaaatatcattctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattgagggacggagg 40562441  T
Q  310 gagtat 315  Q
    ||||||    
T  40562440 gagtat 40562435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 38321841 - 38321910
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatgg 279  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  38321841 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgg 38321910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 8229259 - 8229362
Alignment:
Q  212 aaggacaactcagtaaaagtatctctctttcttt---catctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggag 308  Q
    |||| ||||||||||||| |||| |||||| |||   |||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||| |||    
T  8229259 aagggcaactcagtaaaaatatcactcttttttttttcatctttacacttttcttaatctgtgtgaaatggtcaaataaatcacttattcagagaccgag 8229358  T
Q  309 ggag 312  Q
    ||||    
T  8229359 ggag 8229362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 1207529 - 1207451
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || ||||  |||| | |||||||||||||||    
T  1207529 tctttctttcatctctacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattaagggacggagggagtat 1207451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 9129480 - 9129400
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    ||||||||||| |||||||||||||| ||||||| |||||||| ||||| ||| |||| |||| | |||| ||||||||||    
T  9129480 tctctttcttttatctttacacttttgttaatctttgtgaaatagtcaagtatatcacgtattgagggaccgagggagtat 9129400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 40286858 - 40286946
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||| |||||| |||  ||||||||||||||||| |||||||||||||||||  |||||  | |||||| | ||||||||||||    
T  40286858 tttaagcatgctaaataaagtcattattctttcaaaattaaaaagttttcaatttccaatgcactgagtacacaaacttttataaaaag 40286946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 48947204 - 48947292
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||| |||||||||| ||||||| ||| ||||| | ||||||||||||||||  |||||  |||||||| ||||| ||||||||    
T  48947204 tttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaag 48947292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 24034057 - 24034112
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttc 177  Q
    ||||||||| ||||||  || |||||||||||||||||||||||||||||||||||    
T  24034057 tttaagcatactaaatagagtaattattctttcaaaatttaaaagttttcaatttc 24034112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 290955 - 290899
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||||| ||||||  || |||||||||||||||||||||||||||| |||||||    
T  290955 tttaagcatgctaaatagagtaattattctttcaaaatttaaaagtttttaatttcc 290899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 35259152 - 35259096
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||| || |||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  35259152 tttaagtatgctaaattaagaaattattttttaaaaatgtaaaagttttcaatttcc 35259096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 6552209 - 6552126
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtataat 318  Q
    |||||||||||||| | |   |||||||||||||||||||||||||||||| || || ||||| | ||||  ||||||||||||    
T  6552209 tctctttctttcatttgtcatcttttcttaatctgtgtgaaatggtcaaatgtgacagttattgagggacaaagggagtataat 6552126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 16113919 - 16114006
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    ||||||||| ||| |||||| ||||||| ||||||||| | ||||||||||||||||  |||||  |||||||| | ||| |||||||    
T  16113919 tttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatgcactgattacacaaactttcataaaaa 16114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 48991 - 48905
Alignment:
Q  123 ttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    |||| ||| |||||||||| ||||||||||  ||||| |||||||||||||||| |  |||||| |||||||| | ||| |||||||    
T  48991 ttaatcatgctaaattaagtaattattcttgaaaaatgtaaaagttttcaattttcaatgcaccgattacacaaactttcataaaaa 48905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 31043001 - 31043055
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    |||||||||||||||||||| ||||||| ||| ||||| | ||||||||||||||    
T  31043001 tttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattt 31043055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 39973892 - 39973946
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||||||| |||||||||| ||||||||||| ||||| | ||||||||||||||    
T  39973892 tttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattt 39973946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 40053289 - 40053347
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    |||||||||||||||||||||| | |||| |||||| ||||| | ||||||||||||||    
T  40053289 actttttaagcattctaaattaggtaattgttctttaaaaatgtcaaagttttcaattt 40053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 51904669 - 51904588
Alignment:
Q  128 cattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    |||| ||||||||| ||||||||||| ||||| | ||||||||||||||||  ||| |||| |||||| | ||| |||||||    
T  51904669 cattttaaattaagtaattattcttttaaaatgttaaagttttcaatttccaatgccccaactacacaaactttcataaaaa 51904588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 33791845 - 33791757
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    |||||| || |||||||||| ||||||||||| ||||| | ||| ||||||||||||  | |||| |||||||| | ||| ||||||||    
T  33791845 tttaagtatgctaaattaagtaattattcttttaaaatgtcaaatttttcaatttccaatacaccgattacacaaactttcataaaaag 33791757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 35543509 - 35543453
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||||| |||||||||| ||||||| ||| ||||| | ||||||||||||||||    
T  35543509 tttaagcatgctaaattaagtaattatttttttaaaatatcaaagttttcaatttcc 35543453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 36326202 - 36326154
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    ||||| |||||||| | ||||||||||||||||||||||||||| ||||    
T  36326202 tctctctctttcatttatacacttttcttaatctgtgtgaaatgttcaa 36326154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 26700249 - 26700335
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaa 208  Q
    ||||| ||| |||||| ||| ||||||||||| |||||| ||||||||| |||||||  | |||  |||||||| | ||||||||||    
T  26700249 tttaaacatactaaataaagtaattattcttttaaaattaaaaagtttttaatttccaatacactcattacacaaacttttataaaa 26700335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 31807886 - 31807832
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||||||||||||| |||| ||||||||||| ||||| | | ||||||||||||    
T  31807886 tttaagcattctaaaataagtaattattctttaaaaatgtgatagttttcaattt 31807832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 42573875 - 42573821
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||||||| |||||||||| ||||||||||| ||||| | || |||||||||||    
T  42573875 tttaagcatgctaaattaagtaattattcttttaaaatgttaaggttttcaattt 42573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 20986581 - 20986544
Alignment:
Q  239 tttctttcatctttacacttttcttaatctgtgtgaaa 276  Q
    |||||||||| | |||||||||||||||||||||||||    
T  20986581 tttctttcatttatacacttttcttaatctgtgtgaaa 20986544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 290601 - 290645
Alignment:
Q  132 ctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    |||||||||| ||||||||||| ||||| | ||||||||||||||    
T  290601 ctaaattaagtaattattcttttaaaatgtcaaagttttcaattt 290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 5417704 - 5417736
Alignment:
Q  118 actttttaagcattctaaattaagaaattattc 150  Q
    |||||||||| ||||||||||||||||||||||    
T  5417704 actttttaaggattctaaattaagaaattattc 5417736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 9590625 - 9590673
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    ||||| |||||||| | |||| |||||||||||| ||||||||||||||    
T  9590625 tctctctctttcatttatacaattttcttaatctatgtgaaatggtcaa 9590673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 26544093 - 26544133
Alignment:
Q  278 ggtcaaatatgtcacttattcaaggacggagggagtataat 318  Q
    |||||| | ||||||||||| ||||||||||||||||||||    
T  26544093 ggtcaactgtgtcacttattaaaggacggagggagtataat 26544133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 27209964 - 27209916
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    ||||| |||||||| | ||||||||||||||| ||||| ||||||||||    
T  27209964 tctctctctttcatttatacacttttcttaatatgtgtaaaatggtcaa 27209916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 34861318 - 34861262
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||||||||||||||||| ||||||| ||| ||||| | |||  |||||||||||    
T  34861318 tttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttcc 34861262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 38069999 - 38069893
Alignment:
Q  212 aaggacaactcagtaaaagtatctct--ctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  38069999 aagggcaactcagtaaaagtatcactatctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttgttcaaggacggagg 38069900  T
Q  310 gagtata 316  Q
    || ||||    
T  38069899 gaatata 38069893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 17493722 - 17493827
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  17493722 aagggcaacttagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaaataggtcacttattcagggacggagg 17493821  T
Q  310 gagtat 315  Q
    ||||||    
T  17493822 gagtat 17493827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 18575224 - 18575329
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||    
T  18575224 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttgtgtgaaatgatcaaataggtcacttattcagggacggagg 18575323  T
Q  310 gagtat 315  Q
    ||||||    
T  18575324 gagtat 18575329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 27820969 - 27821074
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||    
T  27820969 aagggcaactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaaaggacgaagg 27821068  T
Q  310 gagtat 315  Q
    ||||||    
T  27821069 gagtat 27821074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 39907104 - 39907208
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||    
T  39907104 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtaaaatggtcaaataagtcacttattaagggacggagg 39907203  T
Q  310 gagta 314  Q
    |||||    
T  39907204 gagta 39907208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 11254696 - 11254800
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||| |||||||||    
T  11254696 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttatgtggaatggtcaaataggtcacttattcagggacggagg 11254795  T
Q  310 gagta 314  Q
    |||||    
T  11254796 gagta 11254800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 11147845 - 11147950
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||| ||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||    
T  11147845 aagggcaattcagtaaaaatatcattctcttcctttcatctttacacttttcttaatctgtgtgaaatgatcaagtaggtcacttattcagggacggagg 11147944  T
Q  310 gagtat 315  Q
    ||||||    
T  11147945 gagtat 11147950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 9753965 - 9754069
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||||||| ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||| | |||||||||    
T  9753965 aaggacaattcagtaaaaatatcattatctttctttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattgagggacggagg 9754064  T
Q  310 gagta 314  Q
    |||||    
T  9754065 gagta 9754069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 12738443 - 12738365
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||  |||| | |||||||| ||||||    
T  12738443 tctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcaagtattgagggacggagagagtat 12738365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 12002267 - 12002355
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    |||||| || |||||||||| ||||||||||| ||||| ||||||||||||||||||  |||||  |||||||| ||||||||||||||    
T  12002267 tttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcactgattacacaaatttttataaaaag 12002355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 13243651 - 13243575
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaata 286  Q
    |||||||| ||||||||| ||||  | ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  13243651 aaggacaattcagtaaaaatatcattatctttcttttatctttacacttttcttaatcggtgtgaaatggtcaaata 13243575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 14016973 - 14016886
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    ||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||  |||||  || ||||| | |||||||||||    
T  14016973 tttaagcatgctaaataaagtaatgattctttcaaaatttaaaagttttcaatttccaatgcactgatcacacaaacttttataaaaa 14016886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 20522944 - 20523015
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattaca 193  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |  ||||| |||||||    
T  20522944 tttaagcatgctaagttaagtaattattctttcaaaatttaaaagttttcaattttcaatgcactaattaca 20523015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 29638412 - 29638457
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggt 280  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  29638412 tctctttctttcatttatacacttttcttaatctgtgtgaaatggt 29638457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 30158173 - 30158112
Alignment:
Q  117 aactttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||| |||||||||||||||||||  ||||||||||| ||||| |||||||||| |||||||    
T  30158173 aactctttaagcattctaaattaaataattattctttgaaaatgtaaaagtttttaatttcc 30158112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 32271168 - 32271225
Alignment:
Q  120 tttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttc 177  Q
    |||||||||||| ||||||||||||||||| ||| ||||| | |||||||||||||||    
T  32271168 tttttaagcattttaaattaagaaattattttttaaaaatgttaaagttttcaatttc 32271225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 38019524 - 38019472
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaat 174  Q
    ||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||    
T  38019524 tttaagcatgctaaattaagaaattattctttaaaatttttaaagttttcaat 38019472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 1876588 - 1876501
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    ||||||||| |||||||||| ||||||||||| ||||| | ||| ||||||||||||  |||||  |||||||| | ||| |||||||    
T  1876588 tttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcactgattacacaaactttcataaaaa 1876501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 17336074 - 17335994
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtca 291  Q
    |||||||  ||||||||| ||||  ||||||||||||||||||||| |||||||||| | |||||||| |||||||| ||||    
T  17336074 aaggacagttcagtaaaaatatcattctctttctttcatctttaca-ttttcttaatttatgtgaaattgtcaaataggtca 17335994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 36907827 - 36907888
Alignment:
Q  149 tctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    ||||||||||||||||||||||||||||||  ||||   |||||||| | ||||||||||||    
T  36907827 tctttcaaaatttaaaagttttcaatttccaatgcaatgattacacaaacttttataaaaag 36907888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 2376834 - 2376779
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttc 177  Q
    |||||||||| ||||||||  ||||||||||| ||||| | |||||||||||||||    
T  2376834 tttaagcattttaaattaaataattattctttaaaaatatcaaagttttcaatttc 2376779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 5878223 - 5878176
Alignment:
Q  233 tctctctttctttcatctttacacttttcttaatctgtgtgaaatggt 280  Q
    ||||||| |||||||| | ||||||||||||||||| |||||||||||    
T  5878223 tctctctctctttcatttatacacttttcttaatctatgtgaaatggt 5878176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 30486605 - 30486696
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaa 209  Q
    |||||||||| ||  ||||| ||| ||||||||||| |||||||||||||||| |||||    |||||  |||||||| | |||||||||||    
T  30486605 actttttaagtatgttaaataaagtaattattcttttaaaatttaaaagtttttaatttataatgcactgattacacaaacttttataaaaa 30486696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 44220814 - 44220743
Alignment:
Q  124 taagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacaca 195  Q
    |||||||  ||||||||| ||||||||||| ||||| | ||||||||||||||||  |||||  ||||||||    
T  44220814 taagcatgttaaattaagtaattattcttttaaaatgtcaaagttttcaatttccaatgcactcattacaca 44220743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 25382620 - 25382658
Alignment:
Q  120 tttttaagcattctaaattaagaaattattctttcaaaa 158  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  25382620 tttttaagcattccaaattaagaaattattctttaaaaa 25382658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 36176694 - 36176728
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctt 152  Q
    |||||||||||||||||||| ||||||||||||||    
T  36176694 actttttaagcattctaaatgaagaaattattctt 36176728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 39594595 - 39594541
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    |||||| || ||||||||||||||||||||||  |||| | ||||||||||||||    
T  39594595 tttaagaatgctaaattaagaaattattctttataaatatcaaagttttcaattt 39594541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 11533243 - 11533288
Alignment:
Q  133 taaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    |||||||| |||||||||||| ||||| | ||||||||||||||||    
T  11533243 taaattaataaattattctttaaaaatgtcaaagttttcaatttcc 11533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 20279661 - 20279625
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaa 158  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  20279661 tttaagcattctaaaataagcaattattctttcaaaa 20279625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 21066288 - 21066252
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaa 158  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  21066288 tttaagcattctaaaataagcaattattctttcaaaa 21066252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 12350468 - 12350572
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  12350468 aagggcaactcagtaaaagcatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttatttatggacggagg 12350567  T
Q  310 gagta 314  Q
    |||||    
T  12350568 gagta 12350572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 29182787 - 29182882
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacg 305  Q
    |||| ||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182787 aagggcaactcagtaaaaatatcactctctttctttcatctttacatttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacg 29182882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 16435975 - 16436075
Alignment:
Q  212 aaggacaactcagtaaaagtatctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggaggga 311  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  16435975 aagggcaactcagtaaaagtatcact--ttctttcatctttacacttttcttaatctgtgtgaaatgctcaaataggtcacttattcagggacggaggga 16436072  T
Q  312 gta 314  Q
    |||    
T  16436073 gta 16436075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 28541691 - 28541587
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||| |||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||    
T  28541691 aagggcaacccagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtaaaatggtcaaataggtcacttatttagggacggagg 28541592  T
Q  310 gagta 314  Q
    |||||    
T  28541591 gagta 28541587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 13042167 - 13042268
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||  |||||||  |||||||||||||||||||||    
T  13042167 aagggcaactcagtaaaaatatcactctctttctttcatctttacactttt-ttaatctgtgtgaaataatcaaatagatcacttattcaaggacggagg 13042265  T
Q  310 gag 312  Q
    |||    
T  13042266 gag 13042268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 30736615 - 30736719
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||  |||| |  ||||||||    
T  30736615 aaggacaattcagtaaaaatatcattctctttctttcatctttacacttttcttaatctgtgtgaaatagttaaataggtcaagtattgagagacggagg 30736714  T
Q  310 gagta 314  Q
    |||||    
T  30736715 gagta 30736719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 13210562 - 13210618
Alignment:
Q  235 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtca 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13210562 tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaagtatgtca 13210618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 1241304 - 1241408
Alignment:
Q  212 aaggacaactcagtaaaagtatctct--ctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| |||||||||||||||||| ||  ||||||||||| |||||| |||||||||| ||||||||||| | |||||  | ||||||||| |||||||||    
T  1241304 aagggcaactcagtaaaagtatcactttctttctttcatttttacatttttcttaatttgtgtgaaatgatgaaatagattacttattcagggacggagg 1241403  T
Q  310 gagta 314  Q
    |||||    
T  1241404 gagta 1241408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 7271182 - 7271109
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    |||| ||| ||||||||| ||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  7271182 aagggcaattcagtaaaaatatcattctatttctttcatctttacacttttcttaatctgtgtgaaattgtcaa 7271109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 31013572 - 31013495
Alignment:
Q  237 tctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||  |||| | ||||||| ||||||    
T  31013572 tctttctttcgtttttacacttttcttaatctgtatgaaatggtcaaataggtcaagtattgagggacggaaggagta 31013495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 3753201 - 3753147
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    |||||||||  ||||| ||| ||||||||||||||||||||||||||||||||||    
T  3753201 tttaagcatgataaataaagtaattattctttcaaaatttaaaagttttcaattt 3753147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 29716875 - 29716815
Alignment:
Q  118 actttttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttcc 178  Q
    ||||||||||||||||||||| || ||||||| ||| ||||| | ||||||||||||||||    
T  29716875 actttttaagcattctaaattcagcaattatttttttaaaatgtcaaagttttcaatttcc 29716815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 31833666 - 31833622
Alignment:
Q  239 tttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 283  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||    
T  31833666 tttctttcatctttacacttttcttaatttgtgtaaaatggtcaa 31833622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 3769424 - 3769370
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    |||||||||  ||| | ||| ||||||||||||||||||||||||||||||||||    
T  3769424 tttaagcatgataattaaagtaattattctttcaaaatttaaaagttttcaattt 3769370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 354685 - 354597
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttccgttgcaccaattacacagatttttataaaaag 210  Q
    |||||||||||||||||| |||| |||||||| |||| ||||||||||  || |||   |||||  |||||| ||| ||||||||||||    
T  354685 tttaagcattctaaattatgaaagtattcttttaaaacttaaaagtttctaacttctaatgcactgattacaaagacttttataaaaag 354597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 13445837 - 13445782
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaatttc 177  Q
    ||||||||| |||||||||| || |||||||| ||||| | |||||||||||||||    
T  13445837 tttaagcatgctaaattaagtaagtattctttaaaaatgtgaaagttttcaatttc 13445782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 13042005 - 13041971
Alignment:
Q  281 caaatatgtcacttattcaaggacggagggagtat 315  Q
    |||||| ||||||||||||||||||||||||||||    
T  13042005 caaataggtcacttattcaaggacggagggagtat 13041971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 24825199 - 24825163
Alignment:
Q  280 tcaaatatgtcacttattcaaggacggagggagtata 316  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  24825199 tcaaacatgtcacttattaaaggacggagggagtata 24825163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 69949 - 70054
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| | |||||||||    
T  69949 aaggacaactcagtaaaattatcactctctttctttcatctttacacttttcttaatctgtatcaaatggtcaaataagtcacttatttagggacggagg 70048  T
Q  310 gagtat 315  Q
    ||||||    
T  70049 gagtat 70054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 69786 - 69752
Alignment:
Q  281 caaatatgtcacttattcaaggacggagggagtat 315  Q
    ||||||||||||||||||| |||||||||||||||    
T  69786 caaatatgtcacttattcagggacggagggagtat 69752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 10697 - 10593
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||| |||||||||    
T  10697 aagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttatgtggaatggtcaaataggtcacttattcagggacggagg 10598  T
Q  310 gagta 314  Q
    |||||    
T  10597 gagta 10593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 10121 - 10016
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||    
T  10121 aagggcaactcagtaaaaatatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggatggagg 10022  T
Q  310 gagtat 315  Q
    ||||||    
T  10021 gagtat 10016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 92273 - 92168
Alignment:
Q  212 aaggacaactcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagg 309  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| | |||||||    
T  92273 aagggcaactcagtaaaagtgtcactctctttctttcatctttacacttttcttaatctatgtgaaatggtcacataggtcacttattcaggaacggagg 92174  T
Q  310 gagtat 315  Q
    ||||||    
T  92173 gagtat 92168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 16564 - 16641
Alignment:
Q  234 ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggaggga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||    
T  16564 ctctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttatttagggacggaggga 16641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 4016 - 4117
Alignment:
Q  218 aactcagtaaaagtatctctctttcttt--catctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagtat 315  Q
    ||||||||||||||| | |||||| |||  ||||||||| |||||||||||||||||||||||||||||||  | | ||||||| |||||||||||||||    
T  4016 aactcagtaaaagtagcgctctttttttttcatctttacccttttcttaatctgtgtgaaatggtcaaatagattatttattcagggacggagggagtat 4115  T
Q  316 aa 317  Q
    ||    
T  4116 aa 4117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 1173 - 1267
Alignment:
Q  221 tcagtaaaagtatc--tctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattcaaggacggagggagta 314  Q
    ||||||||| ||||  |||||||||||||||||||||||| | ||||| |||||||||||||||| || || |  |||| | ||||||||||||||    
T  1173 tcagtaaaaatatcattctctttctttcatctttacacttgt-ttaatttgtgtgaaatggtcaagtaggtgaagtattgagggacggagggagta 1267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 26701 - 26755
Alignment:
Q  122 tttaagcattctaaattaagaaattattctttcaaaatttaaaagttttcaattt 176  Q
    ||||||||| |||||||||| ||||||| ||| ||||| | ||||||||||||||    
T  26701 tttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattt 26755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University