View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_29 (Length: 313)
Name: NF2057_high_29
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 8141497 - 8141205
Alignment:
| Q |
13 |
gagaagcaacaaaaaacaaacaacgaaatcacgaggnnnnnnnnntcataccgagggaccaatagatacaccattcttcaatgctgtgatcaagtgaaaa |
112 |
Q |
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| T |
8141497 |
gagaagcaacaaaaaacaaacaacgaaatcacgaggaaaaaaaaatcataccgagggaccaatggatacaccattcttcaatgctgtgatcaagtgaaaa |
8141398 |
T |
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| Q |
113 |
atgaaatgcttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagagacagttgcttgcatatca |
212 |
Q |
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| T |
8141397 |
atgaaatgcttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagagacagttgcttgcatatca |
8141298 |
T |
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| Q |
213 |
ctgtagtagtccatgttattattttgtggtcctttgctttgtgcataatatgtggagtaataattcacaccaagaaaatcataggaatctttt |
305 |
Q |
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| T |
8141297 |
ctgtagtagtccatgtttttattttgtggtcctttgctttgtgcataatatgtggagtaataattcacaccaagaaaatcataggaatttttt |
8141205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 8165026 - 8164969
Alignment:
| Q |
247 |
tgctttgtgcataatatgtggagtaataattcacaccaagaaaatcataggaatcttt |
304 |
Q |
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| T |
8165026 |
tgctttgtgcataatatgtggtgtaataattcacaccaagaaaatcataggaaccttt |
8164969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 8165257 - 8165203
Alignment:
| Q |
59 |
cataccgagggaccaatagatacaccattcttcaatgctgtgatcaagtgaaaaa |
113 |
Q |
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| T |
8165257 |
cataccgaggagccaatagttactccattcttcattgctgtgatcaagagaaaaa |
8165203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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