View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_32 (Length: 290)
Name: NF2057_high_32
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 38249491 - 38249217
Alignment:
| Q |
1 |
tgttgtgcatgtgcaatttgcaaacattgtcttccttgtttaatgaaagcttgattctgcatctgtttaatatttctttaataaaaaattagttaattac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249491 |
tgttgtgcatgtgcaatttgcaaacattgtcttccttgtttaatgaaagcttgattctgcatctgtttaatatttctttaataaaaaattagttaattac |
38249392 |
T |
|
| Q |
101 |
ttgtaaatatttttctagcagatcatcaacatgtggtttgtacctagagattttgaattgtcagtagcaatacttctattattgtttggcacaccatgct |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249391 |
ttgtaaatatttttctggcagatcatcaacatgtggtttgtacctagagattttgaattgtcagtagcaatacttctattattgtttggcacaccatgct |
38249292 |
T |
|
| Q |
201 |
taagttcttttgagaagagtgaaaataaaataaaatcagctgtttttctgtcccctaagtttgaacttggacctg |
275 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249291 |
taagttcttttgagaagactgaaaataaaataaaatcagctgtttttctgtcccctaagtttgaacttggacctg |
38249217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 38244285 - 38244089
Alignment:
| Q |
56 |
tctgcatctgtttaatatttctttaataaaaaattagttaattacttgtaaatatttttctagcagatcatcaacatgtggtttgtacctagagattttg |
155 |
Q |
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|||| |||| ||||||||||||||||| || | ||||| ||| ||| ||||||||||||| |||||||| |||||||||||||||||||||| ||| |
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| T |
38244285 |
tctgtatctatttaatatttctttaatcaacatttagtgaatcactaataaatatttttctggcagatca---acatgtggtttgtacctagagagtttc |
38244189 |
T |
|
| Q |
156 |
aattgtcagtagcaatacttctattattgtttggcacaccatgcttaagttcttttgagaagagtgaaaataaaataaaatcagctgtttttctgtcccc |
255 |
Q |
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| T |
38244188 |
atttttcagtggcaatacttctgctattgtttggctcaccatgcttaagttcttttttgaatgctgaaaataaaataaaatcagctgtatttttgtcccc |
38244089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 38227752 - 38227602
Alignment:
| Q |
125 |
atcaacatgtggtttgtacctagagattttgaattgtcagtagcaatacttctattattgtttggcacaccatgcttaagttcttttgagaagagtgaaa |
224 |
Q |
| |
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|||| |||||| |||||| |||||||||||| ||| | || |||||||||||| |||||||||| ||| |||||| |||||| |||| |||| ||| |
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| T |
38227752 |
atcagcatgtgttttgtatctagagattttgtatttttagaggcaatacttctactattgtttggtacaacatgctcaagttcctttgtgaaggccgaag |
38227653 |
T |
|
| Q |
225 |
ataaaataaaatcagctgtttttctgtcccctaagtttgaacttggacctg |
275 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38227652 |
ataaaatcaaatcagctgtttttctgtcccctaagtttgaacttggacctg |
38227602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 38254548 - 38254332
Alignment:
| Q |
56 |
tctgcatctgtttaatatttctttaataaaaaattagttaattacttgtaaatatttttctagcagatcatcaacatgtggtttgtacctagagattttg |
155 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||||||||||| |||| |||||| || ||||||| | ||||| | |||| || ||| ||| | |
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| T |
38254548 |
tctgcacctgtttaatatttctttaatcaacaattagttaattactagtaactattttcctgacagatca---atatgtgttctgtatctggagttttgg |
38254452 |
T |
|
| Q |
156 |
aattgtcagtagcaatacttctattattgtttggcacaccatgcttaagttcttttgagaagagtgaaaataaaataaaatcagctgtttttctgtcccc |
255 |
Q |
| |
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||| ||| | || ||| |||| | || ||||||||||||||| ||||||||||| ||||| |||| |||| |||||||||||||||||| ||||||| |
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| T |
38254451 |
tattttcattggccatatttctccttctgattggcacaccatgctcaagttcttttgtgaagactgaagataagataaaatcagctgtttttttgtcccc |
38254352 |
T |
|
| Q |
256 |
taagtttgaacttggacctg |
275 |
Q |
| |
|
|| ||||| || ||||||| |
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| T |
38254351 |
gaaatttgagctaggacctg |
38254332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 38221437 - 38221241
Alignment:
| Q |
62 |
tctgtttaatatttctttaataaaaaattagttaattacttgta---aatatttttctagcagatcatcaacatgtggtttgtacctagagattttgaat |
158 |
Q |
| |
|
|||||||||||| | |||| | || ||||||||||||||| || ||||||||| | |||| ||||||||||||| ||||||||||||||||| | |
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| T |
38221437 |
tctgtttaatatatttttagtcaataattagttaattactaatacttaatatttttttggcag---atcaacatgtggtgtgtacctagagattttgttt |
38221341 |
T |
|
| Q |
159 |
tgtcagtagcaatacttctattattgtttggcac---accatgcttaagttcttttgagaagagtgaaaataaaataaaatcagctgtttttctgtcccc |
255 |
Q |
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| ||| | ||||||||| | | ||||||||||| |||||||||| ||||||||| ||| | ||||||||| |||||||||||||| ||| ||||||| |
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| T |
38221340 |
tttcattggcaatacttgtgctgttgtttggcacagtaccatgcttaggttcttttgtgaaaactgaaaataagataaaatcagctgtatttttgtcccc |
38221241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 18559750 - 18559598
Alignment:
| Q |
109 |
atttttctagcagatcatcaacatgtggtttgtacctagagattttgaattgtcagtagcaatacttctattattgtttggcacaccatgcttaagttct |
208 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| || |||| ||| | || ||||| ||||| | |||||||||| |||||||||||||||| |
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| T |
18559750 |
atttttcttgcagatcatca---tgtggtttgtacctagggagtttgtattattggtggcaatgcttctcctcttgtttggcataccatgcttaagttct |
18559654 |
T |
|
| Q |
209 |
tttgagaagagtgaaaataaaataaaatcagctgtttttctgtcccctaagtttga |
264 |
Q |
| |
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|||| ||| | |||||||||||||||||||||| ||| |||||||||| ||||| |
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|
| T |
18559653 |
tttgtgaatgctaaaaataaaataaaatcagctgtatttttgtcccctaaatttga |
18559598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 264
Target Start/End: Complemental strand, 17434868 - 17434740
Alignment:
| Q |
136 |
gtttgtacctagagattttgaattgtcagtagcaatacttctattattgtttggcacaccatgcttaagttcttttgagaagagtgaaaataaaataaaa |
235 |
Q |
| |
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|||||||||||||||||| | | ||| | ||||||||| | || || || |||||||||||| |||||| |||||||||| |||| | ||||||||| |
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| T |
17434868 |
gtttgtacctagagatttcttactttcacttgcaatacttgtgttgttattaagcacaccatgctcaagttcatttgagaagactgaagaaaaaataaaa |
17434769 |
T |
|
| Q |
236 |
tcagctgtttttctgtcccctaagtttga |
264 |
Q |
| |
|
|||||| | ||| ||||||| || ||||| |
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| T |
17434768 |
tcagctatgtttttgtccccaaaatttga |
17434740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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