View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_35 (Length: 274)
Name: NF2057_high_35
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 29552643 - 29552905
Alignment:
| Q |
1 |
ttttgcctaagcttggagttccttacccttttcctagaccccacatggaacaagttatcatattgagtttgttcttctaccttttcctttatattttttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29552643 |
ttttgcctaagcttggagttccttacccttttcctagaccccacatggaacaagttatcatattgagttagttcttctaccttttcctttatattttttg |
29552742 |
T |
|
| Q |
101 |
ctaataaatacatcaattcatagagtgnnnnnnnnnaaatggtatagggatcatggttcataaaccttacaattttcaattttgtttaggtgaatggtgg |
200 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29552743 |
ctaataaatacatcacttcatagagt-tttttttttaaatggtatagggatcatggttcataaaccttacaattttcaattttgtttaggtgaatggtgg |
29552841 |
T |
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| Q |
201 |
aaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaatgtctctg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29552842 |
aaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaatgtctctg |
29552905 |
T |
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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 25091821 - 25091896
Alignment:
| Q |
182 |
ttgtttaggtgaatggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25091821 |
ttgtttaggtgaatggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggctccaaat |
25091896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25091675 - 25091732
Alignment:
| Q |
1 |
ttttgcctaagcttggagttccttacccttttcctagaccccacatggaacaagttat |
58 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||| || |||||||||||||| |
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| T |
25091675 |
ttttacctaagcttggagttccttacccttttcccaaaccacatatggaacaagttat |
25091732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 4382968 - 4383032
Alignment:
| Q |
195 |
tggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaatgt |
259 |
Q |
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||||||||||| |||||||| ||| | || ||||||||| | ||||| |||||||| |||||||| |
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| T |
4382968 |
tggtggaaatctgatactgaagctgttatcaatgaagctctaaaatcaggattggcaccaaatgt |
4383032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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