View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_high_4 (Length: 581)

Name: NF2057_high_4
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_high_4
NF2057_high_4
[»] chr4 (24 HSPs)
chr4 (198-563)||(5552626-5552991)
chr4 (198-563)||(5853433-5853798)
chr4 (15-203)||(5552408-5552595)
chr4 (288-440)||(5857641-5857793)
chr4 (15-99)||(5853883-5853967)
chr4 (15-88)||(5540201-5540274)
chr4 (27-183)||(5604697-5604853)
chr4 (27-182)||(5848825-5848980)
chr4 (259-353)||(3748464-3748558)
chr4 (20-76)||(5572076-5572132)
chr4 (27-186)||(5857347-5857506)
chr4 (20-68)||(5584291-5584339)
chr4 (300-350)||(5564317-5564367)
chr4 (27-185)||(5612812-5612970)
chr4 (302-416)||(5558528-5558642)
chr4 (27-185)||(5895883-5896041)
chr4 (27-88)||(5887135-5887196)
chr4 (19-72)||(6030992-6031045)
chr4 (302-416)||(5571697-5571811)
chr4 (259-417)||(5613080-5613238)
chr4 (116-185)||(3748285-3748354)
chr4 (300-356)||(5605003-5605059)
chr4 (262-416)||(5539834-5539988)
chr4 (300-356)||(5895679-5895735)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 198 - 563
Target Start/End: Original strand, 5552626 - 5552991
Alignment:
198 atgaaagtcaagaagtataaggttgggaatatgattcttcattggtctttgaaagctagtaagaatattgtgagaaatatttagcttatcaagatatggt 297  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
5552626 atgaaggtcaagaagtataaggttgggaatatgattcgtcattggtctttgaaagttagtaagaaaattgtgagaaatatttagcttatcaagatatggt 5552725  T
298 aatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttt 397  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
5552726 agtttccaaatccagtttggtactattccatgaatctggttatctgaaaggtctagagagcccaatccggattggttaatcaagaaattaggaaatgttt 5552825  T
398 taaagttgcaggatgccaaacctaaaacatcaatgttgggaatagaaagtaaatcataatttgaagcattccaactgattgataagttgttgtatgaaag 497  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5552826 taaagttgcaggatgccaaacctaaaacattaatgttgggaatagaaagtaaatcataatttgaagcattccaactgattgataagttgttgtatgaaag 5552925  T
498 atgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgtt 563  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5552926 atggagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgtt 5552991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 198 - 563
Target Start/End: Complemental strand, 5853798 - 5853433
Alignment:
198 atgaaagtcaagaagtataaggttgggaatatgattcttcattggtctttgaaagctagtaagaatattgtgagaaatatttagcttatcaagatatggt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||| ||||||||||||||    
5853798 atgaaagtcaagaagtataaggttgggaatatgattcttcattggtctttgaaagttagtgagaaaattgtgagaaatctttagcgtatcaagatatggt 5853699  T
298 aatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttt 397  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
5853698 agtttccaaatccagtttggtactattccatgaatctggttatctgaaaggtctagataacccaattcggattggttaatcaagaaactaggaaatgttt 5853599  T
398 taaagttgcaggatgccaaacctaaaacatcaatgttgggaatagaaagtaaatcataatttgaagcattccaactgattgataagttgttgtatgaaag 497  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
5853598 taaagttgcaggatgccaaacctagaacattaattttgggaatagaaagtaaatcataatttaaagcattccaactgattgataagtcgttatatgaaag 5853499  T
498 atgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgtt 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5853498 atgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgtt 5853433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 5552408 - 5552595
Alignment:
15 aattttattaatggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgtatgttattatttnnnnnnnnnnnnaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||| ||||            |||    
5552408 aattttattaatggaaagatcaagcacttgaagatttgaagcattgcagagg-aatgagggaaacttccttgtactttatcatttgagagagagagaaac 5552506  T
115 aatgtggaagacaggtaattaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaaataaatagcagattgatgaaa 203  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
5552507 aatgtggaagacaagtaattaccaatatcttgtggaatactagaaaaattgtttgttgagtaatccaaataaataacagattgatgaaa 5552595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 288 - 440
Target Start/End: Original strand, 5857641 - 5857793
Alignment:
288 aagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaatta 387  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||  ||||||||| ||||||||| ||    
5857641 aagatatggtagtttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaatggtcaatctggattggtttatcaagaaacta 5857740  T
388 ggaaatgttttaaagttgcaggatgccaaacctaaaacatcaatgttgggaat 440  Q
    || |  ||||| ||||||||||||||||| | || ||| |||| |||||||||    
5857741 gggatagttttcaagttgcaggatgccaatcttagaacgtcaaagttgggaat 5857793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 5853967 - 5853883
Alignment:
15 aattttattaatggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgtatgttattattt 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
5853967 aattttattaatggaaagatcaagtacttgaagatttgaagcattgcagaggaaatgagggaaacttccctgtaagttattattt 5853883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 5540274 - 5540201
Alignment:
15 aattttattaatggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgta 88  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
5540274 aattctattaatggaaatatcaagcacttgaagatttgaagcattgcagagggaatgagggatactgccttgta 5540201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 5604697 - 5604853
Alignment:
27 ggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgtatgttattatttnnnnnnnnnnnnaacaatgtggaagac 126  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||  |||||||||            || ||||  |||||     
5604697 ggaaatatcaagcacttgaagatttgaagctttgcagagggaatgagggatgcttccttgtaaattattatttgaaagagatataaaaaatgcagaagaa 5604796  T
127 aggtaattaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaaa 183  Q
    |||||||| |||||||| ||||| |||  ||||||| ||||||||||||||||||||    
5604797 aggtaattgccaatatcatgtgggataacagaaaaattgtttgttgagtaatccaaa 5604853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 5848980 - 5848825
Alignment:
27 ggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgtatgttattatttnnnnnnnnnnnnaacaatgtggaagac 126  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||  ||||||||||   ||||||||            ||   ||||||||||    
5848980 ggaaagatcaagcactagaagatttgaagctttgcagagggaatgagggatgcttccttgtaaactattatttgaaagagatagaaaatttgtggaagac 5848881  T
127 aggtaattaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaa 182  Q
    || |||||||||||||| ||||| |||| ||| ||| |||| ||||||||||||||    
5848880 agataattaccaatatcatgtgggataccagagaaattgttggttgagtaatccaa 5848825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 3748464 - 3748558
Alignment:
259 agaatattgtgagaaatatttagcttatcaagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctag 353  Q
    |||| ||||||||||||||| ||    || |||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
3748464 agaagattgtgagaaatattaagagcttctagatatggcagtttccaaacccaatttggtactattccttgaatctggttatctgaaaggtctag 3748558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 5572132 - 5572076
Alignment:
20 tattaatggaaagatcaagcacttgaagatttgaagcattgcagagggaatgaggga 76  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
5572132 tattaatggaaatatcaagcacttgaagatttgaagcattgcagagggattgaggga 5572076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 5857347 - 5857506
Alignment:
27 ggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgtatgttattatttnnnnnnnnnnnnaacaatgtggaagac 126  Q
    ||||| |||||||||||||| |||||||||  ||||||||||||||||||   |||||||||  |||||||||            |||  ||||||||||    
5857347 ggaaatatcaagcacttgaatatttgaagctctgcagagggaatgagggatgtttccttgtaaattattatttgaaagagatagaaactttgtggaagac 5857446  T
127 aggtaattaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaaataa 186  Q
    |||||||| |||||||||||||  |||   |||||  |||||||||||||||||||||||    
5857447 aggtaattgccaatatcttgtgagataactgaaaatttgtttgttgagtaatccaaataa 5857506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 5584339 - 5584291
Alignment:
20 tattaatggaaagatcaagcacttgaagatttgaagcattgcagaggga 68  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
5584339 tattaatggaaatatcaagcacttgaagatttgaagcattgcagaggga 5584291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 5564317 - 5564367
Alignment:
300 tttccaaatccaatttggtactattccatgaatctggttatctgaaaggtc 350  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
5564317 tttccaaatccaatttggtactattccttgaatctggttatttgaaaggtc 5564367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 5612812 - 5612970
Alignment:
27 ggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgtatgttattatttnnnnnnnnnnnnaacaatgtggaagac 126  Q
    ||||| |||||||| ||||||||||||||| |||||||||||||||||||  ||||||||||   ||||||||            ||| |||  ||||||    
5612812 ggaaatatcaagcatttgaagatttgaagctttgcagagggaatgagggatgcttccttgtaaactattatttgaaagagatagaaaccatgcagaagac 5612911  T
127 aggtaattaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaaata 185  Q
    ||||||||||||||||| || || |||  ||| ||  |||| |||||||||||||||||    
5612912 aggtaattaccaatatcatgcgggataacagagaatttgttggttgagtaatccaaata 5612970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 416
Target Start/End: Original strand, 5558528 - 5558642
Alignment:
302 tccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttttaaa 401  Q
    ||||||||||||| || |||| ||| ||||| |||||| ||||||||||||||  |   ||   ||||||||| |||||||||||||| || ||||| ||    
5558528 tccaaatccaattgggcactactccgtgaatttggttagctgaaaggtctagatggaataacatggattggttcatcaagaaattagggaaagttttcaa 5558627  T
402 gttgcaggatgccaa 416  Q
    |||||||| ||||||    
5558628 gttgcaggttgccaa 5558642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 5896041 - 5895883
Alignment:
27 ggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgtatgttattatttnnnnnnnnnnnnaacaatgtggaagac 126  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||||||   |||| ||||  |||||||||             ||||| ||||||||    
5896041 ggaaatatcaagcacttgaagatttgaagctttgaagagggaatgagggatggttccatgtaaattattatttgaaagagatagatacaatatggaagac 5895942  T
127 aggtaattaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaaata 185  Q
    | ||||||||||||||| ||||| |||  ||| ||  | || |||||||||||||||||    
5895941 aagtaattaccaatatcatgtgggataacagagaatttattggttgagtaatccaaata 5895883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 5887196 - 5887135
Alignment:
27 ggaaagatcaagcacttgaagatttgaagcattgcagagggaatgagggaaacttccttgta 88  Q
    |||||||||||||||||| |||| |||||||||||| ||||||| |||||  ||||||||||    
5887196 ggaaagatcaagcacttgcagatatgaagcattgcaaagggaatcagggatgcttccttgta 5887135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6031045 - 6030992
Alignment:
19 ttattaatggaaagatcaagcacttgaagatttgaagcattgcagagggaatga 72  Q
    |||||||||||||||| |||||| ||||  ||||||||||||||||||||||||    
6031045 ttattaatggaaagattaagcacctgaatgtttgaagcattgcagagggaatga 6030992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 416
Target Start/End: Complemental strand, 5571811 - 5571697
Alignment:
302 tccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttttaaa 401  Q
    |||||||||| || || |||||||| |||||||| |||| ||| |||||||||  || ||||  ||||| |||  |||||||| |||| || ||||| |     
5571811 tccaaatccagttgggaactattccttgaatctgattatgtgagaggtctagaatgctcaatctggatttgtttctcaagaaactagggaaagttttcag 5571712  T
402 gttgcaggatgccaa 416  Q
    |||||||||||||||    
5571711 gttgcaggatgccaa 5571697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 417
Target Start/End: Original strand, 5613080 - 5613238
Alignment:
259 agaatattgtgagaaatatttagcttatcaagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagc 358  Q
    |||| |||||| |||||||| ||||  ||||||  | ||| |||||||||||||||||| || | ||| ||||| |||||  ||||||||||||||        
5613080 agaaaattgtgtgaaatattaagctgttcaagactttgtagtttccaaatccaatttggcacaactccttgaatttggttggctgaaaggtctagatttt 5613179  T
359 ccaattcggattggttaatcaagaaattaggaaatgttttaaagttgcaggatgccaaa 417  Q
    |||||   ||||| ||  |||||||  ||||||| ||||| | ||||||||||||||||    
5613180 ccaatgttgattgatttctcaagaatataggaaaagttttcaggttgcaggatgccaaa 5613238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 3748285 - 3748354
Alignment:
116 atgtggaagacaggtaattaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaaata 185  Q
    |||||||||| ||||||||||||||||||| ||| |||  ||||||  |||| || ||||||||||||||    
3748285 atgtggaagataggtaattaccaatatcttctgggataacagaaaatttgttggtagagtaatccaaata 3748354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 5605003 - 5605059
Alignment:
300 tttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaga 356  Q
    ||||||||||||||| || |||| ||| ||||| | |||||||||||||||||||||    
5605003 tttccaaatccaattcggcactactccttgaatgttgttatctgaaaggtctagaga 5605059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 416
Target Start/End: Complemental strand, 5539988 - 5539834
Alignment:
262 atattgtgagaaatatttagcttatcaagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagccca 361  Q
    ||||||||||||| ||| || || | ||||| | |||  ||||| ||||| || || ||| |||||||||| || |||| |||||||||||||  |  ||    
5539988 atattgtgagaaacattaaggttttgaagattttgtagcttccatatccagttgggcactgttccatgaatttgattatttgaaaggtctagaatgttca 5539889  T
362 attcggattggttaatcaagaaattaggaaatgttttaaagttgcaggatgccaa 416  Q
    ||  ||||| |||  |||||||| |||| || ||||| | |||||||||||||||    
5539888 atctggatttgtttctcaagaaactagggaaagttttcaggttgcaggatgccaa 5539834  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 5895735 - 5895679
Alignment:
300 tttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaga 356  Q
    ||||||||||||||| || |||  ||| ||||| ||||||| |||||||||||||||    
5895735 tttccaaatccaattgggcactgctccttgaatttggttatgtgaaaggtctagaga 5895679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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