View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_high_51 (Length: 237)

Name: NF2057_high_51
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_high_51
NF2057_high_51
[»] chr5 (3 HSPs)
chr5 (7-237)||(41886371-41886600)
chr5 (29-133)||(41900361-41900465)
chr5 (26-134)||(32268617-32268725)
[»] chr8 (2 HSPs)
chr8 (26-75)||(17635581-17635630)
chr8 (26-55)||(17642880-17642909)
[»] chr6 (3 HSPs)
chr6 (26-75)||(9412203-9412252)
chr6 (31-68)||(11935970-11936007)
chr6 (31-68)||(11947950-11947987)
[»] chr4 (2 HSPs)
chr4 (31-68)||(645194-645231)
chr4 (32-92)||(1545952-1546012)
[»] chr3 (1 HSPs)
chr3 (31-68)||(1657614-1657651)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 41886600 - 41886371
Alignment:
Q  7 aataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccacggaagctagaaagg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  41886600 aataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttgctgaggttaccgcggaagctagaaagg 41886501  T
Q  107 tcgagagaggtgagattgatgaatctactgagtagacgaggaggaaaagggagggtttgactttgatcatagcagattgtgagagagaatctgatgcagt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||    
T  41886500 tcgagagaggtgagattgatgaatctactgagtagacgaggaggaaaagggaggg-ttgactttgatcacagcagattgtgagagagaatctgatgcggt 41886402  T
Q  207 tggtgatagacaagaattgtttcgagacaac 237  Q
    ||||||| |||||||||||||||||||||||    
T  41886401 tggtgatggacaagaattgtttcgagacaac 41886371  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 41900465 - 41900361
Alignment:
Q  29 ttgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccacggaagctagaaaggtcgagagaggtgagattgatga 128  Q
    |||||||||||||||||||||||||||| ||||||||| |  ||||||||  |||||||||||  |||||  || || | ||| |||||||||||| | |    
T  41900465 ttgagtgatgtgagtttcaatggaaaatgagagatttgacaaagaagtttgttgaggttaccatagaagcgcgagagattgagggaggtgagattggtaa 41900366  T
Q  129 atcta 133  Q
    |||||    
T  41900365 atcta 41900361  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 32268617 - 32268725
Alignment:
Q  26 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccacggaagctagaaaggtcgagagaggtgagattga 125  Q
    ||||||||||| ||||||||||||||||||  ||||||||| | |||||| ||  |||| |||||   ||| |  || |||||||| |||||||| |||     
T  32268617 agattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagcttgttgagtttaccgttgaaacacgagaggtcgagggaggtgaggttgg 32268716  T
Q  126 tgaatctac 134  Q
    |||||||||    
T  32268717 tgaatctac 32268725  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 17635630 - 17635581
Alignment:
Q  26 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaag 75  Q
    |||||||||||| |||||||||||||||||  |||||||| || ||||||    
T  17635630 agattgagtgatatgagtttcaatggaaaaggagagatttcgcagagaag 17635581  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 17642909 - 17642880
Alignment:
Q  26 agattgagtgatgtgagtttcaatggaaaa 55  Q
    ||||||||||||||||||||||||||||||    
T  17642909 agattgagtgatgtgagtttcaatggaaaa 17642880  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 9412203 - 9412252
Alignment:
Q  26 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaag 75  Q
    ||||| ||||||| ||||||||||||||||  ||||||||| ||||||||    
T  9412203 agattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaag 9412252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 11936007 - 11935970
Alignment:
Q  31 gagtgatgtgagtttcaatggaaaattagagatttggc 68  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  11936007 gagtgatgtgagtctcaatggaaaactagagatttggc 11935970  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 11947987 - 11947950
Alignment:
Q  31 gagtgatgtgagtttcaatggaaaattagagatttggc 68  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  11947987 gagtgatgtgagtctcaatggaaaactagagatttggc 11947950  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 645194 - 645231
Alignment:
Q  31 gagtgatgtgagtttcaatggaaaattagagatttggc 68  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  645194 gagtgatgtgagtctcaatggaaaactagagatttggc 645231  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 1545952 - 1546012
Alignment:
Q  32 agtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccac 92  Q
    |||| ||||||||||||||||||| |||||||||||  |||||| ||  |||||| |||||    
T  1545952 agtgttgtgagtttcaatggaaaagtagagatttggtagagaagcttgttgaggtcaccac 1546012  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 1657614 - 1657651
Alignment:
Q  31 gagtgatgtgagtttcaatggaaaattagagatttggc 68  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  1657614 gagtgatgtgagtctcaatggaaaactagagatttggc 1657651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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