View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2057_high_52 (Length: 235)
Name: NF2057_high_52
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 47299214 - 47299004
Alignment:
| Q |
11 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47299214 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcgaggtttaatgttaacaattcgccacttgttggatactacggtaactgttttgcttac |
47299115 |
T |
|
| Q |
111 |
ccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaataca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47299114 |
ccagcggccgtcaccactgcaaggaagctttgtggaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaataca |
47299015 |
T |
|
| Q |
211 |
tgcattctgtg |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
47299014 |
tgcattctgtg |
47299004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 47292602 - 47292397
Alignment:
| Q |
16 |
aagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttacccagc |
115 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
47292602 |
aagaggtacgaatgatgtgcgtcgtcaatgcacgctcgaggtttaacattaacaattcgccacttgttggatattacggtaactgttttgcttacccagc |
47292503 |
T |
|
| Q |
116 |
ggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaatacatgcat |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47292502 |
ggccgtcaccactgcagggaagctttgtggaaatccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcat |
47292403 |
T |
|
| Q |
216 |
tctgtg |
221 |
Q |
| |
|
|||||| |
|
|
| T |
47292402 |
tctgtg |
47292397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 47267641 - 47267850
Alignment:
| Q |
11 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttac |
110 |
Q |
| |
|
|||||| ||| ||||||||||||| || | ||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
47267641 |
agatgacgagatacgaatgatgtgtattgtcaatgcacgttcgaggtttaatgctaacaattcgccacttgttggatactacggtaattgttttgcttac |
47267740 |
T |
|
| Q |
111 |
ccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaataca |
210 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47267741 |
ccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttatgctgtggagttggtaagaaaattaaaagctgaagttacagaggaatata |
47267840 |
T |
|
| Q |
211 |
tgcattctgt |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
47267841 |
tgcattctgt |
47267850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 47283606 - 47283813
Alignment:
| Q |
11 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttac |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |||||||||| | | || ||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
47283606 |
agatgaagaagtacgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgaccattcgccacttgttggatattatggtaactgttttgctttc |
47283705 |
T |
|
| Q |
111 |
ccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaataca |
210 |
Q |
| |
|
|| || || |||||||| ||| |||||||||||| |||||| || |||||||||||||| ||| |||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
47283706 |
ccggctgctgtcaccaccgcagggaagctttgtggaaaccctttaggttatgcagtggaattgataagaaaagcaaaagctcaagttacagaagaataca |
47283805 |
T |
|
| Q |
211 |
tgcattct |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
47283806 |
tgcattct |
47283813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 47279013 - 47279220
Alignment:
| Q |
11 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttac |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |||||||||| | | || ||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
47279013 |
agatgaagaagtacgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgaccattcgccacttgttggatattatggtaactgttttgctttc |
47279112 |
T |
|
| Q |
111 |
ccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaataca |
210 |
Q |
| |
|
|| || || |||||||| ||| |||||||||||| ||| || || ||||||| |||||| ||| |||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
47279113 |
ccggctgctgtcaccaccgcagggaagctttgtggaaatcctttaggttatggagtggaattgataagaaaagcaaaagctcaagttacagaagaataca |
47279212 |
T |
|
| Q |
211 |
tgcattct |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
47279213 |
tgcattct |
47279220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 47242737 - 47242944
Alignment:
| Q |
11 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||||| || |||| ||| |||||||||| || ||||| || |||||| | |
|
|
| T |
47242737 |
agatgaagaggtacgaatgatgtgcatcgttaatgcacgttccaggtttagtgctaacccttctttgtttgttggatattacggtaattgcattgctttc |
47242836 |
T |
|
| Q |
111 |
ccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaataca |
210 |
Q |
| |
|
| ||||| |||||||| |||| | ||||||||| ||||| ||| |||||||||||||||||| |||||||| |||| || |||||||||||||||||| |
|
|
| T |
47242837 |
tcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataagaaaagcaaaaactcaagttacagaggaataca |
47242936 |
T |
|
| Q |
211 |
tgcattct |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
47242937 |
tgcattct |
47242944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 47256861 - 47257067
Alignment:
| Q |
11 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaa---ttcgccacttgttggatactatggtaactgttttgct |
107 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||||||| ||||||| || ||| || |||| | || ||||||| ||||| |||||| ||||| |
|
|
| T |
47256861 |
agatgaagatgtgcgaatgatgtgcatcgttaatgcacgctcgaggtttagtgctaataaccgttcgtcgctcattggatattatggcaactgtattgct |
47256960 |
T |
|
| Q |
108 |
tacccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaat |
207 |
Q |
| |
|
| | | ||||| |||||||| |||| | ||||||||| ||||| ||| |||||||||||||||||| |||||||| ||||||| ||||||||||| | | |
|
|
| T |
47256961 |
ttctcggcggcagtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataagaaaagcaaaagctcaagttacagagaagt |
47257060 |
T |
|
| Q |
208 |
acatgca |
214 |
Q |
| |
|
||||||| |
|
|
| T |
47257061 |
acatgca |
47257067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 32731404 - 32731611
Alignment:
| Q |
11 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||||| || |||| ||| || ||||||| || ||||| ||| |||||| | |
|
|
| T |
32731404 |
agatgaagaggtacgaatgatgtgcatcgttaatgcacgttccaggtttagtgctaacccttctttgtttattggatattacggtaattgtattgctttc |
32731503 |
T |
|
| Q |
111 |
ccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaataca |
210 |
Q |
| |
|
| ||||| |||||||| |||| | ||||||||| ||||| ||| |||||||||||||||||| |||||||| |||| || |||||||||||||||||| |
|
|
| T |
32731504 |
tcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataagaaaagcaaaaactcaagttacagaggaataca |
32731603 |
T |
|
| Q |
211 |
tgcattct |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
32731604 |
tgcattct |
32731611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University