View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_59 (Length: 208)
Name: NF2057_high_59
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_59 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 1684645 - 1684423
Alignment:
| Q |
1 |
caggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaactt---------------t |
85 |
Q |
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| T |
1684645 |
caggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaacttctattccaataacttt |
1684546 |
T |
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| Q |
86 |
atattcagatatgaattatgctgtatcttataaagtattttccctaaacttgttacatatgatatgatcaacagaaaaaggttataacgactaagagtgt |
185 |
Q |
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| T |
1684545 |
atattcagatatgaattatactgtatcttataaagtattttctctaaacttgttacatatgatatgatcaacagaaaaaggttataacgactaagagtgt |
1684446 |
T |
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| Q |
186 |
gaaatacatgccattctggctct |
208 |
Q |
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| T |
1684445 |
gaaatacatgccattctggctct |
1684423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 1695067 - 1694985
Alignment:
| Q |
2 |
aggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaactt |
84 |
Q |
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||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
1695067 |
aggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttctcctcttacgatcatggtaagtaactt |
1694985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 1694941 - 1694858
Alignment:
| Q |
120 |
gtattttccctaaacttgttacatatgatatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattctggctct |
208 |
Q |
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| T |
1694941 |
gtattttctctaaacttgttacatatgatg-----aacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctct |
1694858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 1971085 - 1971025
Alignment:
| Q |
24 |
tttgtgatgtcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaactt |
84 |
Q |
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| T |
1971085 |
tttgtgatatcttccccatattgatgtatgtctctcctcttaccatcgtggtaagtaactt |
1971025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 1700167 - 1700096
Alignment:
| Q |
8 |
ttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctcttacaatcatggtaagt |
79 |
Q |
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| T |
1700167 |
ttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaatcatggtaagt |
1700096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 1699995 - 1699950
Alignment:
| Q |
163 |
aaggttataacgactaagagtgtgaaatacatgccattctggctct |
208 |
Q |
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| T |
1699995 |
aaggttataaaaaccaagagtgtgaaatacatgccattttggctct |
1699950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 43151576 - 43151628
Alignment:
| Q |
33 |
tcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaacttt |
85 |
Q |
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| T |
43151576 |
tcttgaacataattatgtatatctctcctcttacagtcatggtaagtaacttt |
43151628 |
T |
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