View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_10 (Length: 476)
Name: NF2057_low_10
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 11404185 - 11404523
Alignment:
| Q |
15 |
ggtaaccatgagatttatttatttactttggtaaatccatatat-tctctacaaaactactaagnnnnnnnnn-aactactcataataagatacgaggga |
112 |
Q |
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| T |
11404185 |
ggtaaccatgagatttatttatttactttggtaaatccatatatctctctacaaaactacaaagttttttttttaactactcataataagatacgaggga |
11404284 |
T |
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| Q |
113 |
atataattctattnnnnnnnncagtttaaatgagaagaaaacggttcagatggaannnnnnnnnn--atggatgagaagttaattatagcatacaatgag |
210 |
Q |
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| T |
11404285 |
atataattctattaaaaaaa-cagtttaaatgagaagaaaacggttcagatggaattttttatttttatggatgagaagttaattttagcatacaatgag |
11404383 |
T |
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| Q |
211 |
aagaattttnnnnnnnnnnnnnntaccttgaaatgtttcccatgggtagacgatgccatcatgattcctgtcgaagaatgcaacgtgtttctgtagaaca |
310 |
Q |
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| T |
11404384 |
aagaattt---aaaaaaaaaaattaccttgaaatgtttcccatgggtagacgatgccatcatgattcctgtcgaagaatgcaacgtgtttctgtagaaca |
11404480 |
T |
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| Q |
311 |
ttttgatcatgttctatttgtttctctgcatgatttatatgaa |
353 |
Q |
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| T |
11404481 |
ttttgatcatgttctatttgtttctctgcatgatttatatgaa |
11404523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 11404590 - 11404636
Alignment:
| Q |
418 |
ggttaagattttcagatacctccgttgttgtttgtggtagaagatga |
464 |
Q |
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| T |
11404590 |
ggttaagattttcagatacctccgttgttgtttgtggtagaagatga |
11404636 |
T |
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