View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_11 (Length: 474)

Name: NF2057_low_11
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_11
NF2057_low_11
[»] chr4 (7 HSPs)
chr4 (139-456)||(46249151-46249489)
chr4 (138-456)||(46252424-46252760)
chr4 (319-456)||(46017386-46017524)
chr4 (319-456)||(46197654-46197792)
chr4 (139-267)||(46017204-46017332)
chr4 (139-267)||(46197472-46197600)
chr4 (190-289)||(46266731-46266830)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 139 - 456
Target Start/End: Complemental strand, 46249489 - 46249151
Alignment:
Q  139 caagatggcaaaattgatcactgtgttatcaatatttctaattgtattgatatccaaatgcaattccttgatgccgttttgaactgtacactgtaaatca 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||    
T  46249489 caagatggcaaaattgatcactgtgttatcaatatttctaattgtattgatatccaaatgcaattccttgatgccattttcaactatacattgtaaatca 46249390  T
Q  239 attataactgatatgattggggagtgtaa---------------------ttcacaacaatatgattcatgttgttctgctattgaatatattataacta 317  Q
    ||||||||||||||||| |||||||||||                     ||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  46249389 attataactgatatgatgggggagtgtaaaccatattacatggaccacaattcaccaccatatgattcatgttgttctgctgttgaatatattataacta 46249290  T
Q  318 cttcttccggttgcatttgtgatattaaattggaagaaatcgacaatttacctttcgatgccacaaacacggccaacttgcttactctttgtggagtatc 417  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46249289 cttcttacggttgcatttgtgatattaaattggaagaaatcgacaatttacctttcgatgccacaaacacggccaacttgcttactctttgtggagtatc 46249190  T
Q  418 cctcccctgtcaaggtaaataattaactctaactctttt 456  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46249189 cctcccctgtcaaggtaaataattaactctaactctttt 46249151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 138 - 456
Target Start/End: Complemental strand, 46252760 - 46252424
Alignment:
Q  138 tcaagatggcaaaattgatcactgtgttatcaatatttctaattgtattgatatccaaatgcaattccttgatgccgttttgaactgtacactgtaaatc 237  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||    
T  46252760 tcaagatggcaaaattgatcactgtgttgtcaatatttctaattgtattgatatccaaatgcaattccttgatgccattttcaactatacattgtaaatc 46252661  T
Q  238 aattataactgatatgattggggagtgtaa---------------------ttcacaacaatatgattcatgttgttctgctattgaatatattataact 316  Q
    |||||||||||||||||| |||||||||||                     |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  46252660 aattataactgatatgatgggggagtgtaaaccatattacatggaccacaattcacaaccatatgattcatgttgttctgctgttgaatatattataact 46252561  T
Q  317 acttcttccggttgcatttgtgatattaaattggaagaaatcgacaatttacctttcgatgccacaaacacggccaacttgcttactctttgtggagtat 416  Q
    ||||||| ||||||||||||||||||| ||||| ||   ||| ||||||| || || |||| ||||||||| ||||||||||||||||||||||||||||    
T  46252560 acttcttacggttgcatttgtgatatttaattgaaa---atccacaatttgccatttgatgtcacaaacacagccaacttgcttactctttgtggagtat 46252464  T
Q  417 ccctcccctgtcaaggtaaataattaactctaactctttt 456  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  46252463 ccctctcctgtcaaggtaaataattaactctaactctttt 46252424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 319 - 456
Target Start/End: Original strand, 46017386 - 46017524
Alignment:
Q  319 ttcttccggttgcatttgtgatattaaattggaagaaatcgacaatttacctttcgatgccacaaacacggccaacttgcttactctttgtggagtatcc 418  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46017386 ttcttacggttgcatttgtgatattaaattggaagaaatcgacaatttacctttcgatgccacaaacacggccaacttgcttactcttagtggagtatcc 46017485  T
Q  419 ctcccctgtcaaggtaaataattaactc-taactctttt 456  Q
    ||| |||||||||||||||||||||||| ||||||||||    
T  46017486 ctctcctgtcaaggtaaataattaactcttaactctttt 46017524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 319 - 456
Target Start/End: Original strand, 46197654 - 46197792
Alignment:
Q  319 ttcttccggttgcatttgtgatattaaattggaagaaatcgacaatttacctttcgatgccacaaacacggccaacttgcttactctttgtggagtatcc 418  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46197654 ttcttacggttgcatttgtgatattaaattggaagaaatcgacaatttacctttcgatgccacaaacacggccaacttgcttactcttagtggagtatcc 46197753  T
Q  419 ctcccctgtcaaggtaaataattaactc-taactctttt 456  Q
    ||| |||||||||||||||||||||||| ||||||||||    
T  46197754 ctctcctgtcaaggtaaataattaactcttaactctttt 46197792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 46017204 - 46017332
Alignment:
Q  139 caagatggcaaaattgatcactgtgttatcaatatttctaattgtattgatatccaaatgcaattccttgatgccgttttgaactgtacactgtaaatca 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||    
T  46017204 caagatggcaaaattgatcactgtgttatcaatatttctaattgtattgatatccaaatgcaattccttgatgccattttcaactatacattgtaaatca 46017303  T
Q  239 attataactgatatgattggggagtgtaa 267  Q
    ||||||||||||||||| |||||||||||    
T  46017304 attataactgatatgatgggggagtgtaa 46017332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 46197472 - 46197600
Alignment:
Q  139 caagatggcaaaattgatcactgtgttatcaatatttctaattgtattgatatccaaatgcaattccttgatgccgttttgaactgtacactgtaaatca 238  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||| |||| |||||||||    
T  46197472 caagatggcaaaattgatcactgtgttgtcaatatttttaattgtattgatattcaaatgcaattccttgatgccattttcaactatacattgtaaatca 46197571  T
Q  239 attataactgatatgattggggagtgtaa 267  Q
    ||||||||||||||||| |||||||||||    
T  46197572 attataactgatatgatgggggagtgtaa 46197600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 46266830 - 46266731
Alignment:
Q  190 atccaaatgcaattccttgatgccgttttgaactgtacactgtaaatcaattataactgatatgattggggagtgtaattcacaacaatatgattcatgt 289  Q
    |||||||||||||||||||||||| |||| |||| |||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  46266830 atccaaatgcaattccttgatgccattttcaactatacattgtaaatcaatcataactgatatgatgggggagtgtaattcataacaatatgattcatgt 46266731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University