View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_15 (Length: 419)

Name: NF2057_low_15
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_15
NF2057_low_15
[»] chr4 (2 HSPs)
chr4 (37-410)||(2007263-2007636)
chr4 (23-404)||(1742732-1743113)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 37 - 410
Target Start/End: Complemental strand, 2007636 - 2007263
Alignment:
Q  37 atattatcaccaacataaaccgcttttatttgatggttgacgaaaaaatccaacatggagttggaatcttccttaccttctactccgatatacgttctct 136  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007636 atattatcaccaacataaaccgcttttacttgatggttgacgaaaaaatccaacatggagttggaatcttccttaccttctactccgatatacgttctct 2007537  T
Q  137 ccattttgatctcacttagtaatgaacaatttctcgtgagtatgtaaaaggttgagtttgttagctggcaacaaccgctaaggtttatagaggtcaagtt 236  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007536 ccattttgatctcacttagtaagggacaatttctcgtgagtatgaaaaaggttgagtttgttagctggcaacaaccgctaaggtttatagaggtcaagtt 2007437  T
Q  237 atgaagaaatattgaaaacttgttgatacattgatcagttagaaagtcggcttttcgaaaatctaagcattgaacatattgacatttggataaaacataa 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007436 atgaagaaatattgaaaacttgttgatacattgatcagttagaaagtcagcttttcgaaaatctaagcattgaacatattgacatttggataaaacataa 2007337  T
Q  337 aagattcctgaaaatgtaaagttgtaacagtcttgcaggacaagttttttcagacactcaacagcaccctttgc 410  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007336 aagattcctgaaaatgtaaagttgcaacagtcttgcaggacaagttttttcagacactcaacagcaccctttgc 2007263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 404
Target Start/End: Original strand, 1742732 - 1743113
Alignment:
Q  23 catcattcaataaaatattatcaccaacataaaccgcttttatttgatggttgacgaaaaaatccaacatggagttggaatcttccttaccttctactcc 122  Q
    ||||||||| ||||||||||||||| | || ||||||||||| |||| ||||||||| ||||||  ||||||| ||||||||||||| ||||||||| ||    
T  1742732 catcattcagtaaaatattatcacccaaatgaaccgcttttacttgacggttgacgacaaaatctgacatggaattggaatcttcctcaccttctacccc 1742831  T
Q  123 gatatacgttctctccattttgatctcacttagtaatgaacaatttctcgtgagtatgtaaaaggttgagtttgttagctggcaacaaccgctaaggttt 222  Q
    ||||||||||||||||||||||||||||  ||| || | ||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  1742832 gatatacgttctctccattttgatctcaagtagcaagggacaatttcttgtgagtatgaaaaaggttgagttcgttagctggcaacaaccactaaggttt 1742931  T
Q  223 atagaggtcaagttatgaagaaatattgaaaacttgttgatacattgatcagttagaaagtcggcttttcgaaaatctaagcattgaacatattgacatt 322  Q
    |||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  1742932 atagaggtcaagttaataagaaatatcgataacttgttgatacattgatcagttagaaagtcggctttacgaagatctaaggattgaacatattgacatt 1743031  T
Q  323 tggataaaacataaaagattcctgaaaatgtaaagttgtaacagtcttgcaggacaagttttttcagacactcaacagcacc 404  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| | | |||||||||    
T  1743032 tggataaaacataaaatattcctgaaaatgtaaagttgcaacagtcttgaaggacaagttttttcagaaaattaacagcacc 1743113  T

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