View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_17 (Length: 410)
Name: NF2057_low_17
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_17 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 78 - 391
Target Start/End: Complemental strand, 43362 - 43050
Alignment:
| Q |
78 |
cataaagtgaacattttgaataaacaaacttgttatccaagtcaattatcttagtcaacaagaaactatgtttatataaagtataaacgttaactaacga |
177 |
Q |
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| T |
43362 |
cataaagtgaacattttgaataaa-aaacttgttgtccaagtcaattatcttggtcaacaagaaactatgtttatataaatgataaacgttaactaacga |
43264 |
T |
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| Q |
178 |
gtttcaaatacatcaatcgattagcatagttatctaaattaataaaattggagtaaaatgggatatagaggaaacaagaaaagctggttttcatcaataa |
277 |
Q |
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| T |
43263 |
gtttcaaatacatcaatcgattagcatagttatctaaattaataaaattggagtaaaatgggatataaaggaaacaagaaaagctggttttcatcaatat |
43164 |
T |
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| Q |
278 |
caagattcttttctggtaataatgtgaagactactacaactggtgcacctgaagctttcatagttgcagcatcaaagcacttctcttcagcccacaaagt |
377 |
Q |
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| T |
43163 |
caagattcttttgtggtaataatgtgaagactactacaactggtgcacctgaagctttcatagttgcagcatcaaagcatttctcttcagcccacaaagt |
43064 |
T |
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| Q |
378 |
gaacttcaattagt |
391 |
Q |
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| T |
43063 |
gaacttcaattagt |
43050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 6828476 - 6828625
Alignment:
| Q |
40 |
gaagtttcgtggtcagaaagtataattttagtcaatagcataaagtgaacattttgaataaacaaacttgttatccaagtcaattatcttagtcaacaag |
139 |
Q |
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| T |
6828476 |
gaagttccgtggacaagaagtataaaattggtcaaaagtataaagtgaatattttgaattaacaaacttgttgtccaatttaattatc-----caacaag |
6828570 |
T |
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| Q |
140 |
aaactatgtttatataaagtataaacgttaactaacgagtttcaaatacatcaat |
194 |
Q |
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| T |
6828571 |
aaactatgtctatataaagtgtaatagttaatgaatgagtttcaaatgcatcaat |
6828625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 6828788 - 6828856
Alignment:
| Q |
309 |
tactacaactggtgcacctgaagctttcatagttgcagcatcaaagcacttctcttcagcccacaaagt |
377 |
Q |
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| T |
6828788 |
tactgcaactagtggacctaaagcctccatagttgcagcatcaaaacatttctcttcagcccacaaagt |
6828856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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