View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_18 (Length: 397)
Name: NF2057_low_18
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 44970078 - 44969708
Alignment:
| Q |
8 |
atgttttcaacgttcaatttaaggtgtcctatttataannnnnnnnccttctcatttattgatataattattggtgttggctttgttttgcagtttttct |
107 |
Q |
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| T |
44970078 |
atgttttcaacgttcaatttaaggtgtcctatttataattttttt-ccttctcatttattgatataattattggtgttggctttgttttgcagtttttct |
44969980 |
T |
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| Q |
108 |
tgttcaagttcaacaaggaaggcagaatataatgagttttgactgtttcatcgcgtgctctatagtcccataacatggtatcaaagttttaattaattct |
207 |
Q |
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| T |
44969979 |
tgttcaagttcaacaaggaaggcagaatataatgagttttgactgtttcatcgcgtgctcta--gtcccataacatggtatcaaagttttaattaattct |
44969882 |
T |
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| Q |
208 |
cttatggttaataat---ttgcggtgaatggatggaagacgacacatctcacatggtggtgaccttgagtaagtcaggctataccttttgaaaagaaaag |
304 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44969881 |
cttatggttaataataatttgcggtgaatggatggaagtcgacacatctcacatggtggtgaccttgagtaagtcaggctataccttttgaaaagaaaag |
44969782 |
T |
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| Q |
305 |
atgaaggatatgtttcatgtagtgtagttggataataagaccgacgatgagtggaccctactatacaaacatgt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44969781 |
atgaaggatatgtttcatgtagtgtagttggataataagaccgacgatgagtggaccctactatacaaacatgt |
44969708 |
T |
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