View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_23 (Length: 376)

Name: NF2057_low_23
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_23
NF2057_low_23
[»] chr2 (1 HSPs)
chr2 (26-267)||(17830057-17830297)
[»] scaffold0351 (5 HSPs)
scaffold0351 (86-202)||(5437-5553)
scaffold0351 (86-202)||(13780-13896)
scaffold0351 (140-202)||(1-63)
scaffold0351 (32-77)||(5374-5419)
scaffold0351 (31-68)||(13716-13753)
[»] scaffold0002 (2 HSPs)
scaffold0002 (86-202)||(114798-114914)
scaffold0002 (25-77)||(114932-114984)
[»] chr5 (3 HSPs)
chr5 (26-243)||(7822335-7822562)
chr5 (25-77)||(28662926-28662979)
chr5 (86-126)||(28663000-28663040)
[»] chr3 (3 HSPs)
chr3 (87-198)||(44125954-44126065)
chr3 (238-284)||(44126050-44126096)
chr3 (26-77)||(27545768-27545819)
[»] chr1 (4 HSPs)
chr1 (86-199)||(36687824-36687937)
chr1 (87-169)||(26024163-26024245)
chr1 (25-77)||(36687957-36688009)
chr1 (37-75)||(26024265-26024303)
[»] chr4 (1 HSPs)
chr4 (99-214)||(56339660-56339775)
[»] scaffold0248 (1 HSPs)
scaffold0248 (26-146)||(16837-16959)
[»] chr6 (2 HSPs)
chr6 (25-77)||(11303171-11303223)
chr6 (86-135)||(11303104-11303153)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 26 - 267
Target Start/End: Original strand, 17830057 - 17830297
Alignment:
Q  26 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccatnnnnnnnnttggttaagtaaatacaatcaagttaaacttgaaaaataa 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||        || ||||| | |||||||||||||||||||||||||||||    
T  17830057 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagttaaccataaaaaaa-ttagttaaatgaatacaatcaagttaaacttgaaaaataa 17830155  T
Q  126 tttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataatcaaaataaaataaacttggccaatgg 225  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17830156 tttcacatatgattcaagagtaaataatgaattgtgataaaatatataattgtgatagagatgcacacaataatcaaaacaaaataaacttggccaatgg 17830255  T
Q  226 ttaaattttgtcgagatgcacacaataaatattattcaatat 267  Q
    |||| ||||||  ||||| |||  |||| |||||||||||||    
T  17830256 ttaatttttgtatagatgtacaagataagtattattcaatat 17830297  T

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Target: scaffold0351 (Bit Score: 101; Significance: 6e-50; HSPs: 5)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 5437 - 5553
Alignment:
Q  86 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 185  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5437 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataagaaattgtgataaaatatataattgtgatagag 5536  T
Q  186 atgcacacaataatcaa 202  Q
     ||||||||||||||||    
T  5537 gtgcacacaataatcaa 5553  T

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Target: scaffold0351; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 13780 - 13896
Alignment:
Q  86 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 185  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  13780 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgatgcaagactaaataagaaattgtgataaaatatataattgtgatagag 13879  T
Q  186 atgcacacaataatcaa 202  Q
     ||||||||||||||||    
T  13880 gtgcacacaataatcaa 13896  T

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Target: scaffold0351; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 1 - 63
Alignment:
Q  140 caagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataatcaa 202  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1 caagactaaataagaaattgtgataaaatatataattgtgatagaggtgcacacaataatcaa 63  T

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Target: scaffold0351; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 5374 - 5419
Alignment:
Q  32 aaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 77  Q
    |||||||||||||||||||||| |||||||||||||| || |||||    
T  5374 aaaattatatgcaaaaatataagtatagatcaatcaaattaaccat 5419  T

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Target: scaffold0351; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 13716 - 13753
Alignment:
Q  31 aaaaattatatgcaaaaatataaatatagatcaatcaa 68  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13716 aaaaattatatgcaaaaatataagtatagatcaatcaa 13753  T

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Target: scaffold0002 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 114914 - 114798
Alignment:
Q  86 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 185  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  114914 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataagaaattgtgataaaatatataattgtgatagag 114815  T
Q  186 atgcacacaataatcaa 202  Q
     ||||||||||||||||    
T  114814 gtgcacacaataatcaa 114798  T

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Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 114984 - 114932
Alignment:
Q  25 ctcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 77  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| || |||||    
T  114984 ctcaaaaaaaattatatgcaaaaatataagtatagatcaatcaaattaaccat 114932  T

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Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 7822335 - 7822562
Alignment:
Q  26 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccatnnnnnnnn----------ttggttaagtaaatacaatcaagttaaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||                   ||||||||  ||||||||||||||||||||    
T  7822335 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagttaaccaattttataaagaaaaacaattggttaaacaaatacaatcaagttaaact 7822434  T
Q  116 tgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataatcaaaataaaataaact 215  Q
    |||||||||||||||||||| |||||| |  ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  || |||    
T  7822435 tgaaaaataatttcacatataattcaaaatcaaacaaggaattgtgataaaatatataattgtgatagagatgcacaaaataatcaaaacaacgtacact 7822534  T
Q  216 tggccaatggttaaattttgtcgagatg 243  Q
    |||||||  |||||||||||| ||||||    
T  7822535 tggccaaaagttaaattttgtagagatg 7822562  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 28662926 - 28662979
Alignment:
Q  25 ctcaacaaaaattatatgc-aaaaatataaatatagatcaatcaagtttaccat 77  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  28662926 ctcaacaaaaattacatgccaaaaatataaatatagatcaatcaagttaaccat 28662979  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 28663000 - 28663040
Alignment:
Q  86 ttggttaagtaaatacaatcaagttaaacttgaaaaataat 126  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  28663000 ttggttaaggaaatacaatcaagttaaacttgaaaaataat 28663040  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 44125954 - 44126065
Alignment:
Q  87 tggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagaga 186  Q
    |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44125954 tggttaaacaaatacaatcaagttatacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagaga 44126053  T
Q  187 tgcacacaataa 198  Q
    ||||||||||||    
T  44126054 tgcacacaataa 44126065  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 44126050 - 44126096
Alignment:
Q  238 gagatgcacacaataaatattattcaatatatcgagtttggcaaaat 284  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  44126050 gagatgcacacaataagtattaatcaatatatcgagtttggcaaaat 44126096  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 27545819 - 27545768
Alignment:
Q  26 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 77  Q
    |||||||||||||||   |||||||||||||||||||||||||||| |||||    
T  27545819 tcaacaaaaattataaataaaaatataaatatagatcaatcaagttaaccat 27545768  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 36687937 - 36687824
Alignment:
Q  86 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 185  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||| ||||    
T  36687937 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaaaaattgtgataaaatgcataattgtgacagag 36687838  T
Q  186 atgcacacaataat 199  Q
    ||  ||||||||||    
T  36687837 ataaacacaataat 36687824  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 26024245 - 26024163
Alignment:
Q  87 tggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaata 169  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26024245 tggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaagaattctgataaaata 26024163  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 36688009 - 36687957
Alignment:
Q  25 ctcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 77  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  36688009 ctcaacaaaaattatatgcaagaatataaatacagatcaatcaagttaaccat 36687957  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 26024303 - 26024265
Alignment:
Q  37 tatatgcaaaaatataaatatagatcaatcaagtttacc 75  Q
    ||||||||||||||||||||||||||||||||||| |||    
T  26024303 tatatgcaaaaatataaatatagatcaatcaagttaacc 26024265  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 56339660 - 56339775
Alignment:
Q  99 tacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataa 198  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||  | |  ||||| |||||||||||||||||||||| ||||||||||    
T  56339660 tacaatcaagttaaacttggaaaataatttcacatataattcaagacaaaataaaaattaatgatagaatatataattgtgatagagatacacacaataa 56339759  T
Q  199 tcaaaataaaataaac 214  Q
    |||||| |||||||||    
T  56339760 tcaaaagaaaataaac 56339775  T

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Target: scaffold0248 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 16959 - 16837
Alignment:
Q  26 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccatnnnnnnnn---ttggttaagtaaatacaatcaagttaaacttgaaaaa 122  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| |||||           ||||||||  ||||||||||||| |||||||||||||    
T  16959 tcaacaaaaattatatacaaaa-tataaatatagatcaatcaagttaaccataaaaaaaaaaattggttaaacaaatacaatcaagataaacttgaaaaa 16861  T
Q  123 taatttcacatatgattcaagact 146  Q
    ||||||||||||| ||||||||||    
T  16860 taatttcacatatcattcaagact 16837  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 11303223 - 11303171
Alignment:
Q  25 ctcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 77  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  11303223 ctcaacaaaaattatatgcaaaaatacaaatgtagatcaatcaagttaaccat 11303171  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 11303153 - 11303104
Alignment:
Q  86 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatat 135  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  11303153 ttggttaaacaaatacaatcaagttaaacttgaaaaatactttcacatat 11303104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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