View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_24 (Length: 372)
Name: NF2057_low_24
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 55414789 - 55414436
Alignment:
| Q |
1 |
aacaataaaaaatgggaaacatgtagacccaacctaattactactaccctttactgggtgaaccgtgattcacgttgatttatttattttaataataatt |
100 |
Q |
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| T |
55414789 |
aacaataaaaaatgggaaacatgtagacccaacctaattactactacccttgactgggtgaaccgtgattcacgttgatttatttattttaataataatt |
55414690 |
T |
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| Q |
101 |
aagagaaagacaaggtagctaggtgtcgatggagttgaggaagagggatgatagtgaaagtgaagatccgaaaggcctttgagaaaaacaatcaagattg |
200 |
Q |
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| T |
55414689 |
aagagaaagacaaggtagctaggtgtcgatggagttgaggaagagggatgatagtgaaagtgaagatccgaaaggcctttgagaaaaacaatcaagattg |
55414590 |
T |
|
| Q |
201 |
tctccgtatccaactccaagtatgtcacaatatctcttgtaaaatccaattcgatcctgcactcttccatcctgtcctcttccgcattcaagccctccgt |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55414589 |
tctccatatccaactccaagtatgtcacaatatctcttgtaaaatccaattcgatcctgcactcttccatcctgtcctcttccgcattcaagccctccgt |
55414490 |
T |
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| Q |
301 |
ttattatgtttgtcaccgtaccgtagcccaggagcctccctgccgcacgatctg |
354 |
Q |
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|||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
55414489 |
ttattatgttggtcaccgtaccgtatcccgggagcctccctgccgcacgatctg |
55414436 |
T |
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