View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_26 (Length: 369)
Name: NF2057_low_26
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 6576794 - 6577132
Alignment:
| Q |
17 |
agaagaaatggatattgctactagttctaatcataattaagcatgcagctgattgatacctggagtacaatctcatttattttcaacttgagtgactttt |
116 |
Q |
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| T |
6576794 |
agaagaaatggatattgctactagttctaatcataattaagcatgcagctgattgatacctggagtacaatctcatttattttcaacttgagtgactttt |
6576893 |
T |
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| Q |
117 |
tcccctcgcctttggttgttatataatgtccactagaagtggaagtagaagttgaagtagaaaggcgatacccttgtatgagctttactaatccaatttg |
216 |
Q |
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| T |
6576894 |
tcccctcgcctttggttgttatataatgtccactagaagtggaagtagaagttgaagtagaaaggcgatacccttgtatgagctttactaatccaatttg |
6576993 |
T |
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| Q |
217 |
gctcccatgagaagcaaacat-aaggttgaatctaccaccaagaaaattaatcattacaacctactactaccactgaatcaatagaaagcatctaaactt |
315 |
Q |
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| T |
6576994 |
gctcccatgagaagcaaacatcaaggttgaatctaccaccaagaaaattaatcattacaacctactactaccactgaatcaatagaaagcatctaaactt |
6577093 |
T |
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| Q |
316 |
gtgtgtatgccttggtttggatgggggatccgttgagac |
354 |
Q |
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| T |
6577094 |
gtgtgtatgccttggtttagatgggggatccgttgagac |
6577132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 34244146 - 34244075
Alignment:
| Q |
166 |
agttgaagtagaaaggcgatacccttgtatgagctttactaatccaatttggctcccatgagaagcaaacat |
237 |
Q |
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| T |
34244146 |
agttgaagttgataagcggtacccttcaatgagctttactagtccaatttggttcccatgagaagcaaacat |
34244075 |
T |
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