View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_35 (Length: 301)
Name: NF2057_low_35
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_35 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 37801173 - 37801428
Alignment:
| Q |
36 |
cttaattttgccaccaggaagccatgtatctgttggataatcaaaactttgccatagaggatttgatgcatcatcattaggcctagttcttaaaacgaga |
135 |
Q |
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| T |
37801173 |
cttaatttttccacccggaagaaatgtatctgtaggatgatcaaaactctgccatagaggatttgatacatcatcatcaggcctatgtcttaaaacaaga |
37801272 |
T |
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| Q |
136 |
ttgccggtatctaagaggagagctacaacagaacctaacgtaggaaaactcatgtttgttgaccaaacttgttttgaagactcattcaatagaactaaat |
235 |
Q |
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| T |
37801273 |
tttccagtatctagaagcatagctacaacagaatctgacttaggaaaactcatgtttgttgaccaaacttgttttgaagactcattcaatagaactaaat |
37801372 |
T |
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| Q |
236 |
tacccgctgaaatttttaaggtagcagtgtttttattagagacagggttgtctctg |
291 |
Q |
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| T |
37801373 |
taccagctgaaatttttaaggtagcagtgtttttattagagacagggttgtctctg |
37801428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 291
Target Start/End: Complemental strand, 37764587 - 37764324
Alignment:
| Q |
28 |
ttgtctaccttaattttgccaccaggaagccatgtatctgttggataatcaaaactttgccatagaggatttgatgcatcatcattaggcctagttctta |
127 |
Q |
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| T |
37764587 |
ttgtctaacttaattttaccaccaggaagccatgtatctgctggatgatcaaaactctgccatagagaatctaatacatcatcattaggcctatttttca |
37764488 |
T |
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| Q |
128 |
aaacgagattgccggtatctaagaggagagctacaacagaacctaacgtaggaaaactcatgtttgttgaccaaacttgttttgaagactcattcaatag |
227 |
Q |
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| T |
37764487 |
aaacaagatttccagtatctagaagcatggctacaacagaatctgacttaggaacattcatgtttgttgaccaaacttgttttgaagactcatttaatat |
37764388 |
T |
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| Q |
228 |
aactaaattacccgctgaaatttttaaggtagcagtgtttttattagagacagggttgtctctg |
291 |
Q |
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| T |
37764387 |
aactaaattaccatctgagatttttaaggtggcggtgtttttgtcagagacaggattgtctctg |
37764324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 2686082 - 2686114
Alignment:
| Q |
61 |
gtatctgttggataatcaaaactttgccataga |
93 |
Q |
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| T |
2686082 |
gtatctgttggataatcaaagctttgccataga |
2686114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 14772 - 14715
Alignment:
| Q |
37 |
ttaattttgccaccaggaagccatgtatctgttggataatcaaaactttgccatagag |
94 |
Q |
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| T |
14772 |
ttaatttttccaccaggaagccatgtatctgatggaaaatcaaaactctgccaaagag |
14715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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