View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_41 (Length: 270)
Name: NF2057_low_41
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 25758972 - 25758721
Alignment:
| Q |
1 |
caaatactacattagacttgtttgatatcctttggatgaaaacttgtcaaacaacacagtagaggaacttgcccatgaaggacatgagtctgattgtgat |
100 |
Q |
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| T |
25758972 |
caaatactacattagacttgtttgataccctctggatgaaaacttgtcaaacaacatagtagaggaacttgcccatgaaggacatgagtctgattgtgtt |
25758873 |
T |
|
| Q |
101 |
aaagcattgcannnnnnnnactttctttgaggtaaagttatttattcatttgagctaggggacatcattggtcaagatttaaacatgtggaaatgtattg |
200 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25758872 |
aaagcattgcattttttt-actttctttgaggta--gttatttattcatttgagctaggggacatcattgatcaagatttaaacatgtggaaatgtattg |
25758776 |
T |
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| Q |
201 |
gccaaa----tctcctttgaggacatagtgatgcttcttcaaattcactactcaa |
251 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25758775 |
gccaaataactctcctttgaagacatagtgatgcttcttcaaattcactactcaa |
25758721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 29478643 - 29478391
Alignment:
| Q |
1 |
caaatactacattagacttgtttgatatcctttggatgaaaacttgtcaaacaacacagtagaggaacttgcccatgaaggacatgagtctgattgtgat |
100 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||| | |
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| T |
29478643 |
caaatactatattagacttgtttgataccctttggatgaaaacttgtcaaacaacatagtagaggaacttgcacatgaaggaaatgatcctgattgtgtt |
29478544 |
T |
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| Q |
101 |
aaagcattgcannnnnnnnactttctttgaggtaaagttatttattcatttgagctaggggacatcattggtcaagatttaaacatgtggaaatgtattg |
200 |
Q |
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|||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
29478543 |
aaagtattgcatttttt--actttctttaaggtaaagttatttattcatttgagctaggggacatcattgatcaagattcaaacatgtggaaatgtattg |
29478446 |
T |
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| Q |
201 |
gccaaa----tctcctttgaggacatagtgatgcttcttcaaattcactactcaa |
251 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29478445 |
ctcaaataactctcctttgaggacatagtgaagcttcttcaaattcactactcaa |
29478391 |
T |
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