View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_42 (Length: 263)

Name: NF2057_low_42
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_42
NF2057_low_42
[»] chr2 (2 HSPs)
chr2 (18-253)||(6408961-6409199)
chr2 (78-142)||(9160696-9160760)
[»] chr1 (4 HSPs)
chr1 (82-142)||(1345184-1345244)
chr1 (87-142)||(1609457-1609512)
chr1 (85-129)||(19050386-19050430)
chr1 (72-143)||(9090198-9090269)
[»] chr6 (4 HSPs)
chr6 (77-142)||(11121767-11121832)
chr6 (78-141)||(5474476-5474540)
chr6 (77-125)||(9513573-9513621)
chr6 (86-142)||(24316971-24317027)
[»] chr3 (1 HSPs)
chr3 (78-142)||(9152541-9152605)
[»] chr8 (2 HSPs)
chr8 (78-129)||(3736032-3736083)
chr8 (77-129)||(3941352-3941404)
[»] chr7 (3 HSPs)
chr7 (78-129)||(21292681-21292732)
chr7 (78-129)||(24648708-24648759)
chr7 (78-143)||(7792623-7792688)
[»] chr4 (2 HSPs)
chr4 (85-142)||(22310284-22310341)
chr4 (85-129)||(29688570-29688614)
[»] chr5 (1 HSPs)
chr5 (78-126)||(29731334-29731382)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 6408961 - 6409199
Alignment:
Q  18 ctcagtaggttttacaccctcttaaaaatgtaatgtttaagnnnnnnnnnnnnn---atagatcaagagaaaaatgacatcaaaatgaatagtgttcaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||                |||||||||||| |||||||||| |||||||||||| | ||||    
T  6408961 ctcagtaggttttacaccctcttaaaaatgtaatgtttaagttttttttttttttttatagatcaagagcaaaatgacattaaaatgaatagtatccaat 6409060  T
Q  115 taagttggaaccctaatcttatttgttgcaatgtttaagttggttgtttcgtaacctatgagcaaaattaaattataaacattcacaaaattacatcatc 214  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409061 taaattggaaccctaatcttatttgttgcaatgtttaagttggttgtttcgtaacctatgagcaaaattaaattataaacattcacaaaattacatcatc 6409160  T
Q  215 agtcgtttatgtttaactcttatttcagattgatctctg 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6409161 agtcgtttatgtttaactcttatttcagattgatctctg 6409199  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 9160760 - 9160696
Alignment:
Q  78 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 142  Q
    |||||| ||||||||||||||| |||| |||| ||| ||||||||||||||| ||| || |||||    
T  9160760 caagagtaaaatgacatcaaaaagaatggtgtccaactaagttggaaccctactctaatatgttg 9160696  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 1345184 - 1345244
Alignment:
Q  82 agaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 142  Q
    |||||||||||||||| | || |||||||||||||||||||||||||| |||||| |||||    
T  1345184 agaaaaatgacatcaataagagtagtgttcaattaagttggaaccctagtcttatctgttg 1345244  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 1609512 - 1609457
Alignment:
Q  87 aatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 142  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||| || |||||    
T  1609512 aatgacatcaaaaagaatagtgtccaattaagttggaaccctactctaatatgttg 1609457  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 19050430 - 19050386
Alignment:
Q  85 aaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 129  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||    
T  19050430 aaaatgacataaaaaagaatagtgtccaattaagttggaacccta 19050386  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 9090269 - 9090198
Alignment:
Q  72 atagatcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttgc 143  Q
    ||||| |||||| |||||||||| |||| ||| | ||| |||||||||||||||| || |||||| ||||||    
T  9090269 atagaccaagagtaaaatgacataaaaaagaacaatgtacaattaagttggaaccatactcttatctgttgc 9090198  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 11121832 - 11121767
Alignment:
Q  77 tcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 142  Q
    ||||||| ||||||||||||||| ||||||||| ||| |||||||| |||||| ||| ||||||||    
T  11121832 tcaagagcaaaatgacatcaaaaagaatagtgtccaactaagttggtaccctactctaatttgttg 11121767  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 5474540 - 5474476
Alignment:
Q  78 caagagaaaaatgacatcaaaat-gaatagtgttcaattaagttggaaccctaatcttatttgtt 141  Q
    ||||||||||||||||| ||||  |||||||||  || |||||||||||||||||||||| ||||    
T  5474540 caagagaaaaatgacataaaaaaagaatagtgtcaaactaagttggaaccctaatcttatatgtt 5474476  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 9513621 - 9513573
Alignment:
Q  77 tcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaac 125  Q
    ||||||| ||||||||||||||| ||||||||| ||| || ||||||||    
T  9513621 tcaagagcaaaatgacatcaaaaagaatagtgtccaactaggttggaac 9513573  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 24317027 - 24316971
Alignment:
Q  86 aaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 142  Q
    |||||||||||||| ||||||||| ||| |||||||| |||||| ||| | ||||||    
T  24317027 aaatgacatcaaaaagaatagtgtccaactaagttggtaccctactctaaattgttg 24316971  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 9152605 - 9152541
Alignment:
Q  78 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 142  Q
    |||||| ||||||||||||||| ||||| | ||||| |||||||||||| || ||||||||||||    
T  9152605 caagagcaaaatgacatcaaaaagaatatttttcaactaagttggaaccatactcttatttgttg 9152541  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 3736083 - 3736032
Alignment:
Q  78 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 129  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  3736083 caagagcaaaatgacatcaaaaagaatagtgtccaattaagttggtacccta 3736032  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 3941352 - 3941404
Alignment:
Q  77 tcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 129  Q
    ||||||| ||||||||||||||| ||||||||| ||| || ||||||||||||    
T  3941352 tcaagagcaaaatgacatcaaaaagaatagtgtccaactatgttggaacccta 3941404  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 21292732 - 21292681
Alignment:
Q  78 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 129  Q
    |||||| ||||||| ||||||| ||||||||||||| |||||||| ||||||    
T  21292732 caagagcaaaatgatatcaaaaagaatagtgttcaactaagttggtacccta 21292681  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 24648759 - 24648708
Alignment:
Q  78 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 129  Q
    |||||| ||||||||||||||| ||||||||| ||| |||||||| ||||||    
T  24648759 caagagcaaaatgacatcaaaaagaatagtgtccaactaagttggtacccta 24648708  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 7792623 - 7792688
Alignment:
Q  78 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttgc 143  Q
    |||||| ||||||||||||||| ||||| |||  || |||||||| |||||| ||| |||||||||    
T  7792623 caagagcaaaatgacatcaaaaagaataatgtcaaactaagttggtaccctactctaatttgttgc 7792688  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 22310284 - 22310341
Alignment:
Q  85 aaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 142  Q
    ||||||||||  ||||||||||||| ||| |||||||||||  || ||||||||||||    
T  22310284 aaaatgacatagaaatgaatagtgtccaactaagttggaactatactcttatttgttg 22310341  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 29688570 - 29688614
Alignment:
Q  85 aaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 129  Q
    ||||||||||||||| |||||| |||||| |||||||| ||||||    
T  29688570 aaaatgacatcaaaaagaatagagttcaactaagttggcacccta 29688614  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 29731382 - 29731334
Alignment:
Q  78 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacc 126  Q
    |||||| |||||||||| |||||| ||||||| ||| ||||||||||||    
T  29731382 caagagtaaaatgacataaaaatggatagtgtccaactaagttggaacc 29731334  T

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