View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_46 (Length: 258)
Name: NF2057_low_46
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_46 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 1895355 - 1895593
Alignment:
| Q |
17 |
cacgttttctatatatgataataattaaagagtaacaacagccttatctttcactttggtttttggttcaaaaaatggtcgaaatcaaaacattaccata |
116 |
Q |
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| T |
1895355 |
cacgttttctatatatgataataattaaagagtaacaacagccttatctttcattttggtttttggttcaaaaaatggtccaaatcaaaacattaccata |
1895454 |
T |
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| Q |
117 |
aaaagcatgtcacagaaattctgaagttcaccaaggtttgtaattgttgtgtaagtgatagaaacatgacaagaagatggtccttttacatggatgtttt |
216 |
Q |
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| T |
1895455 |
aaaagcaatt---agaaattctgaagttcaccaaggtttgtaattgttgtgtaagtgatagaaacatgacaagaagatggtccttttacatggatgtttt |
1895551 |
T |
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| Q |
217 |
gccaattttagtgatcacaggacaggaaactattgaaatggc |
258 |
Q |
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| T |
1895552 |
gccaattttagtgatcataggacaggaaactattgaaatggc |
1895593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 1901824 - 1901966
Alignment:
| Q |
77 |
ttttggttcaaaaaatggtcgaaatcaaaacattaccataaaaagcatgtcacagaaattctgaagttcaccaaggtttgtaattgttgtgtaagtgata |
176 |
Q |
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| T |
1901824 |
ttttggttcaaaaaatggtcaaaatcaaaacctgatcatcaaaa-catgtcacagaaattctgaagttcatcaaggtttgtgattgttgtgcaagtgaca |
1901922 |
T |
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| Q |
177 |
gaaacatgacaagaagatggtccttttacatggatgttttgcca |
220 |
Q |
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| T |
1901923 |
gaaacatgacaagaagatggtcactttacatggatgttttgcca |
1901966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 1890667 - 1890743
Alignment:
| Q |
182 |
atgacaagaagatggtccttttacatggatgttttgccaattttagtgatcacaggacaggaaactattgaaatggc |
258 |
Q |
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| T |
1890667 |
atgagaagaagatggtccttttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggc |
1890743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 1910960 - 1911011
Alignment:
| Q |
169 |
aagtgatagaaacatgacaagaagatggtccttttacatggatgttttgcca |
220 |
Q |
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| T |
1910960 |
aagtgacagaaacatgacaagaagatggtccttgtacatggatgttctgcca |
1911011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 1878003 - 1878040
Alignment:
| Q |
174 |
atagaaacatgacaagaagatggtccttttacatggat |
211 |
Q |
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| T |
1878003 |
atagaaagatgacaagaagatggtccttttacatggat |
1878040 |
T |
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