View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_5 (Length: 570)
Name: NF2057_low_5
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 23 - 476
Target Start/End: Original strand, 17382427 - 17382886
Alignment:
| Q |
23 |
taaataatatacaatatgaatgagaaacgcaaaagagagaaagaaaggttgtacctaagtaaaatgtcttggcatactcagcacacacatcaccacatct |
122 |
Q |
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| T |
17382427 |
taaataatatacaatatgaatgagaaatgcaaaagagagaaagaaaggttgtacctaagtaaaatgtcttggcatactcagcacatacatcaccacatct |
17382526 |
T |
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| Q |
123 |
atcataagcagaactcaaaagttccccattggtgaaatcaccttcaataggcttatcatccaaattcaaacctctctttttaatatcttttctttgttcc |
222 |
Q |
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| T |
17382527 |
atcataagcagaactcaaaagttccccattggtgaaatcaccttcaataggcttatcatccaaattcaaacctctctttttaatatcttttctttgttcc |
17382626 |
T |
|
| Q |
223 |
ttcactagggctgcttgcttcaacaccacttcatacaccctctcctctgaggatcttgtaggttcaacaactgcacttgaaaaacaagcaaagctaattc |
322 |
Q |
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| T |
17382627 |
ttcactaaagctgcttgcttcaacaccacttcatacactctctcctctgaggatcttgtaggttcaacaactgcacttgaaaaacaagcaaagctaattc |
17382726 |
T |
|
| Q |
323 |
cagaacaaggtctaaacctcctttgagttcttacatcttttcctccaagacccattaaggaaatggcattctctttgagtccacaattcacccaaagtag |
422 |
Q |
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| T |
17382727 |
cagaacaatgtctaaacctcctttgagttctcacatctcttcctacaagacccattaaggaaatggcattctctttgagtccacaattcacccaaagaag |
17382826 |
T |
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| Q |
423 |
aacaccagacatcttaggaa------tagaacaatttgcttcttttttcttttagtgcac |
476 |
Q |
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| T |
17382827 |
aacaccagacatcttaggaacagaacaagaacaatttgcttcttttttcttttagtgcac |
17382886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 534 - 570
Target Start/End: Original strand, 17382967 - 17383003
Alignment:
| Q |
534 |
tggtttaggaaatattattctcaatttgaggatatat |
570 |
Q |
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| T |
17382967 |
tggtttaggaaatattattctcaatttgaggatatat |
17383003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 39526121 - 39526217
Alignment:
| Q |
74 |
tacctaagtaaaatgtcttggcatactcagcacacacatcaccacatctatcataagcagaactcaaaagttccccattggtgaaatcaccttcaat |
170 |
Q |
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| T |
39526121 |
tacctaggtaaaaagtcttggcatactcagcacaaacttcaccacaccgatcataagcagaattcaataaatctccattgctaaaatcaccttcaat |
39526217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 39526274 - 39526313
Alignment:
| Q |
233 |
ctgcttgcttcaacaccacttcatacaccctctcctctga |
272 |
Q |
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| T |
39526274 |
ctgcttgcttcaaaactacttcatacaccctctcctctga |
39526313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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