View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_50 (Length: 250)
Name: NF2057_low_50
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_50 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 143039 - 142800
Alignment:
| Q |
1 |
tgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattt |
100 |
Q |
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| T |
143039 |
tgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattt |
142940 |
T |
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| Q |
101 |
tgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgc |
200 |
Q |
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| T |
142939 |
tgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgc |
142840 |
T |
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| Q |
201 |
tattgcaaccattattttcaactaataacacccctctgtg |
240 |
Q |
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| T |
142839 |
tattgcaaccattattttcaactaataacacccctctgtg |
142800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 45960643 - 45960869
Alignment:
| Q |
4 |
gaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattttga |
103 |
Q |
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| T |
45960643 |
gaaactttgtgatggattcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcagcgaagtgtttgcaagatttgcaattttga |
45960742 |
T |
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| Q |
104 |
gtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgctat |
203 |
Q |
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| T |
45960743 |
gtcaactccaattttttac---ttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaataaaactaaggcaattttccttattgctat |
45960839 |
T |
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| Q |
204 |
tgcaaccattattttcaactaataacaccc |
233 |
Q |
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| T |
45960840 |
tgcaaccattcttttcacctaataacaccc |
45960869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 298416 - 298196
Alignment:
| Q |
7 |
actttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtc |
106 |
Q |
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| T |
298416 |
actttgtgatggactcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcaatgaagtgtttgcaagatttgcaatttggagtc |
298317 |
T |
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| Q |
107 |
aactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgctattgc |
206 |
Q |
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|||||||| |||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298316 |
aactccaagtttttactta---acttttgaggataataaacttcaaagtagttaaaagcaagatcaataaaactaacacaattttccttattgctattga |
298220 |
T |
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| Q |
207 |
aaccattattttcaactaataaca |
230 |
Q |
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||||||| |||||| ||||||||| |
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| T |
298219 |
aaccattcttttcacctaataaca |
298196 |
T |
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