View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_52 (Length: 248)
Name: NF2057_low_52
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_52 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 2353234 - 2353005
Alignment:
| Q |
19 |
atataggtgatatatacattcaataccatccatgaacgcagttgtacacctcatcctgcatgcatggaccatgatccacacacttagcaaacatgctttt |
118 |
Q |
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| T |
2353234 |
atataggtgatatatacattcaataccatccatgaacgcagttgtacacctcatcctgcatgcatggaccatgatccacacacttagcaaacatgctttt |
2353135 |
T |
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| Q |
119 |
tacaatctcgacacatacgtctttttctttgttcattgagacaaatctatgcaatctctcattgcaaaacatatgttttacaccacagattaaagtcatc |
218 |
Q |
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| T |
2353134 |
tacaatctcgacacatacgtctttttctttgttcattgagacaaatctatgcaatctctcattgcaaaacatatgttttacaccacagattaaagtcatc |
2353035 |
T |
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| Q |
219 |
atgtgcaaagttatgatagttaatgatcct |
248 |
Q |
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| T |
2353034 |
atgtgcaaagttatgatagttaatgatcct |
2353005 |
T |
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