View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_54 (Length: 242)
Name: NF2057_low_54
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 7461643 - 7461434
Alignment:
| Q |
11 |
attctctctttcaacatttaggggattaaactaagcaaacaacttttttaattaaacaaagtcataacaacaatatagtgaatnnnnnnnntatgaagac |
110 |
Q |
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| T |
7461643 |
attctctctttcaacatttagggtattaaactaagcaaacaacttttttaattaaacaa-----taacaacaatatagtgaataaaaaaaaaatcaagac |
7461549 |
T |
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| Q |
111 |
caccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatatagtaatat |
210 |
Q |
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| T |
7461548 |
caccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaa--------tat |
7461457 |
T |
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| Q |
211 |
aatattgttggagaaatgatgat |
233 |
Q |
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| T |
7461456 |
aatattgttggagaaatgatgat |
7461434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 7446565 - 7446468
Alignment:
| Q |
106 |
aagaccaccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatata |
203 |
Q |
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| T |
7446565 |
aagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatata |
7446468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 7446631 - 7446593
Alignment:
| Q |
22 |
caacatttaggggattaaactaagcaaacaactttttta |
60 |
Q |
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| T |
7446631 |
caacatttagtggattaaactaagcaaacaactttttta |
7446593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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