View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_6 (Length: 525)

Name: NF2057_low_6
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_6
NF2057_low_6
[»] chr3 (10 HSPs)
chr3 (1-503)||(24889865-24890368)
chr3 (236-291)||(3461759-3461814)
chr3 (231-291)||(24160558-24160618)
chr3 (226-301)||(44976568-44976644)
chr3 (236-291)||(33533208-33533263)
chr3 (237-299)||(26583098-26583160)
chr3 (224-285)||(4045657-4045718)
chr3 (224-273)||(51412013-51412062)
chr3 (228-264)||(11820039-11820075)
chr3 (234-286)||(48894109-48894161)
[»] chr1 (8 HSPs)
chr1 (231-290)||(3140364-3140423)
chr1 (224-291)||(25270184-25270251)
chr1 (231-296)||(47141836-47141901)
chr1 (224-291)||(9768832-9768899)
chr1 (258-291)||(4605899-4605932)
chr1 (226-270)||(5680738-5680782)
chr1 (258-298)||(38028535-38028575)
chr1 (231-291)||(52961112-52961172)
[»] chr7 (9 HSPs)
chr7 (224-290)||(23799306-23799372)
chr7 (220-291)||(24427368-24427439)
chr7 (224-291)||(43635593-43635660)
chr7 (224-291)||(43712336-43712403)
chr7 (236-293)||(10020504-10020561)
chr7 (224-273)||(11808061-11808110)
chr7 (224-300)||(7465462-7465538)
chr7 (236-300)||(14772370-14772434)
chr7 (236-300)||(15222822-15222886)
[»] chr5 (7 HSPs)
chr5 (220-299)||(3102146-3102226)
chr5 (236-289)||(17557037-17557090)
chr5 (231-291)||(42553171-42553230)
chr5 (236-291)||(22867027-22867082)
chr5 (236-291)||(32252954-32253009)
chr5 (233-272)||(40250209-40250248)
chr5 (220-269)||(27278773-27278822)
[»] chr2 (6 HSPs)
chr2 (224-286)||(32288386-32288448)
chr2 (233-304)||(37515982-37516053)
chr2 (220-270)||(44721723-44721773)
chr2 (238-291)||(16538518-16538571)
chr2 (258-291)||(19352871-19352904)
chr2 (237-282)||(45314424-45314469)
[»] chr8 (2 HSPs)
chr8 (220-291)||(25470865-25470936)
chr8 (231-283)||(1028584-1028635)
[»] chr4 (1 HSPs)
chr4 (258-300)||(3465903-3465945)
[»] scaffold0219 (1 HSPs)
scaffold0219 (258-291)||(21021-21054)
[»] chr6 (2 HSPs)
chr6 (224-273)||(19680271-19680320)
chr6 (224-273)||(30833040-30833089)


Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 24890368 - 24889865
Alignment:
Q  1 ttattagaaatgaaatatgttttattttttaccgtaggaaagtgttgcaatacacattttagccttgttgaatgtac----ttacgcgaagacaattttc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  24890368 ttattagaaatgaaatatgttttattttttaccgtaggaaagtgttgcaatacacattttagccttgttgaatgtacggacttacgcgaagacaattttc 24890269  T
Q  97 aactctttatgaataaaataacattcctatttttgtgctaaaataacatgtcaaagtacgtagttcacaccgatgcatggat-ccttgtcccatcttccc 195  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  24890268 aactctttatgaataaaataacattcctatttttgtgctaaa-taacatgtcaaagtacgtagttcacaccgatgcatggattccttgtcccaccttctc 24890170  T
Q  196 aatctcaccgnnnnnnnnnnnnattaaatggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgatta 295  Q
    |||||| |||            ||||| |||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||| |||    
T  24890169 aatctcgccgtttttttt----attaagtggggtttccgaggttcgaaccccaacccctacatataacaatgcatgtccttgtcaactgagttatgctta 24890074  T
Q  296 c-gggacaaaaaatttcttcccattgctacctactccatagaaccaaccacgtgtccaccttcccaccgttccaaaactatcttctatctaggactagga 394  Q
    | |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24890073 ccgggacaaaaattttcttcccattgctaccgactccatagaaccaaccacgtgtccaccttctcaccgttccaaaactatcttctatctaggactagga 24889974  T
Q  395 tcctacactactgttcttttatctccatattttgcaatcccaacgctaaatccaaatccaaccctttcagtttcatgtgatcccaccttcattcacgttc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24889973 tcctacactactgttcttttatctccatattttgcaatcccaacgctaaatccaaatccaaccctttcagtttcatgtgatcccaccttcattcacgttc 24889874  T
Q  495 acttctctc 503  Q
    |||||||||    
T  24889873 acttctctc 24889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 3461759 - 3461814
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||||||||| || ||||| ||||||||||||||||  ||||||||||||||||    
T  3461759 ggttcgaaccccaacccctacatataacaatgcatgtccctgtcaactgagttatg 3461814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 24160558 - 24160618
Alignment:
Q  231 tccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||| ||||||||||||||| ||| | ||||||| ||||||||| || |||||||||||||    
T  24160558 tccggggttcgaaccccgacccctgcatataacagtgcatgtctctgccaactgagttatg 24160618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 44976644 - 44976568
Alignment:
Q  226 gggtttccgaggttcgaaccccgactcctacttataacaatgca-tgtctttgtcaactgagttatgattacgggac 301  Q
    |||| |||||||||||||| ||||||| ||| ||||| |||||| ||||  |||||||||||||||| | |||||||    
T  44976644 gggtgtccgaggttcgaactccgactcttacatataataatgcattgtccctgtcaactgagttatgctcacgggac 44976568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 33533263 - 33533208
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||||||||| ||  |||| ||||||||||||||||| || |||||||||||||    
T  33533263 ggttcgaaccccaaccactacatataacaatgcatgtctctgccaactgagttatg 33533208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 26583160 - 26583098
Alignment:
Q  237 gttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgattacggg 299  Q
    |||||||||||||| ||| | ||||| ||||||||||  |||||| ||||||||||| |||||    
T  26583160 gttcgaaccccgacccctgcatataataatgcatgtccctgtcaattgagttatgatcacggg 26583098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 4045657 - 4045718
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactga 285  Q
    |||||| ||||| ||||||||| |||| ||| | ||||||||||||||||  ||||||||||    
T  4045657 tggggtgtccgaagttcgaacctcgacccctgcatataacaatgcatgtccctgtcaactga 4045718  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 51412013 - 51412062
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtc 273  Q
    |||||| |||| | ||||||||||||||||| | ||||||||||||||||    
T  51412013 tggggtatccgggattcgaaccccgactcctgcatataacaatgcatgtc 51412062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 11820075 - 11820039
Alignment:
Q  228 gtttccgaggttcgaaccccgactcctacttataaca 264  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  11820075 gtttccggggttcgaaccccgactcctacatataaca 11820039  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 48894161 - 48894109
Alignment:
Q  234 gaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgag 286  Q
    ||||||||||| ||||| ||||  |||||||||||||||  ||||||||||||    
T  48894161 gaggttcgaactccgacccctatatataacaatgcatgttcttgtcaactgag 48894109  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 3140423 - 3140364
Alignment:
Q  231 tccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttat 290  Q
    ||||| ||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  3140423 tccgatgtttgaaccccgacccctacatataacaatgcatgtctctgtcaactgagttat 3140364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 25270184 - 25270251
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||| ||||||||||||| ||||  |||||| |||||||||||||||| |||||||| || |||||    
T  25270184 tggggtgtccgaggttcgaatcccggatcctacatataacaatgcatgtccttgtcaaccgaattatg 25270251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 47141836 - 47141901
Alignment:
Q  231 tccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgattac 296  Q
    |||| ||||||||| ||||| ||| | ||||||||||||||||  |||||||||||||||| ||||    
T  47141836 tccggggttcgaactccgacccctgcatataacaatgcatgtccctgtcaactgagttatgcttac 47141901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 9768832 - 9768899
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||| |||| ||||||||||||||| ||| | ||||||||||||||||  || |||||||| ||||    
T  9768832 tggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatg 9768899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 4605899 - 4605932
Alignment:
Q  258 tataacaatgcatgtctttgtcaactgagttatg 291  Q
    ||||||||||||||||| ||||||||||||||||    
T  4605899 tataacaatgcatgtctctgtcaactgagttatg 4605932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 5680782 - 5680738
Alignment:
Q  226 gggtttccgaggttcgaaccccgactcctacttataacaatgcat 270  Q
    |||||| |||||||||||||||||| ||||| ||||| |||||||    
T  5680782 gggttttcgaggttcgaaccccgacccctacatataataatgcat 5680738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 38028575 - 38028535
Alignment:
Q  258 tataacaatgcatgtctttgtcaactgagttatgattacgg 298  Q
    |||||||||||||||| ||||||||| ||||||| ||||||    
T  38028575 tataacaatgcatgtccttgtcaactaagttatgcttacgg 38028535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 52961112 - 52961172
Alignment:
Q  231 tccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||| ||||||||||||| | ||| | |||||||||||||||| ||| |||||||| ||||    
T  52961112 tccggggttcgaaccccggcccctgcatataacaatgcatgtccttgccaactgagctatg 52961172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 23799372 - 23799306
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttat 290  Q
    |||||| ||||||||||||| |||||| ||| | ||||||||||||||||| || ||||||||||||    
T  23799372 tggggtgtccgaggttcgaatcccgacccctgcatataacaatgcatgtctctgccaactgagttat 23799306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 24427439 - 24427368
Alignment:
Q  220 taaatggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||||||| | || ||||||||||  ||| ||| | ||||||||||||||||| || |||||||||||||    
T  24427439 taaatggggtattcggggttcgaaccttgacccctgcatataacaatgcatgtctctgccaactgagttatg 24427368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 43635660 - 43635593
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||| |||| |||||||||||||||  || | ||||||||||||||| | || |||||||||||||    
T  43635660 tggggtgtccggggttcgaaccccgaccgctgcatataacaatgcatgtttctgccaactgagttatg 43635593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 43712336 - 43712403
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||| |||||||||||||||||||| |||   ||||||||||||||||  |  |||||||||||||    
T  43712336 tggggtatccgaggttcgaaccccgacccctgtatataacaatgcatgtccctaccaactgagttatg 43712403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 10020504 - 10020561
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgat 293  Q
    |||||||||||| || ||| | ||||||||||||||||  ||||||||||| ||||||    
T  10020504 ggttcgaaccccaacccctgcatataacaatgcatgtccctgtcaactgagctatgat 10020561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 11808110 - 11808061
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtc 273  Q
    |||||| |||| ||||||||||||||| ||| | ||||||||||||||||    
T  11808110 tggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtc 11808061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 7465538 - 7465462
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgattacggga 300  Q
    |||||| |||| ||||||||||||| | ||| | ||||| ||||||||||| || |||||||| |||| | ||||||    
T  7465538 tggggtgtccggggttcgaaccccggcccctgcatataataatgcatgtctctgccaactgagctatgctcacggga 7465462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 14772370 - 14772434
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgattacggga 300  Q
    |||| |||||||| | ||||| | ||||||||||||||| || ||||||||||||| | ||||||    
T  14772370 ggtttgaaccccggcccctacatgtaacaatgcatgtctctgccaactgagttatgctcacggga 14772434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 15222822 - 15222886
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgattacggga 300  Q
    |||| |||||||| | ||||| | ||||||||||||||| || ||||||||||||| | ||||||    
T  15222822 ggtttgaaccccggcccctacatgtaacaatgcatgtctctgccaactgagttatgctcacggga 15222886  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 3102146 - 3102226
Alignment:
Q  220 taaatggggtttccgaggttcgaaccccgactcctacttataacaatgca-tgtctttgtcaactgagttatgattacggg 299  Q
    |||||||||| | || ||||||||||||||||||||| |||||||||||| ||||  || |||||||| |||| |||||||    
T  3102146 taaatggggtgttcggggttcgaaccccgactcctacatataacaatgcattgtccctgccaactgagctatgcttacggg 3102226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 17557090 - 17557037
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagtta 289  Q
    |||| |||||||||| ||||| ||||||||||||||||| || |||||||||||    
T  17557090 ggtttgaaccccgacccctacatataacaatgcatgtctctgccaactgagtta 17557037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 42553171 - 42553230
Alignment:
Q  231 tccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||| ||||||||||||||| ||| | |||||||||||||||| |||||||||||| ||||    
T  42553171 tccggggttcgaaccccgac-cctgcatataacaatgcatgtcgttgtcaactgagctatg 42553230  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 22867027 - 22867082
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||||| || ||||||| | ||||| |||||||||| |||||||||||||||||    
T  22867027 ggttcgaatcctgactcctgcatataataatgcatgtccttgtcaactgagttatg 22867082  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 32252954 - 32253009
Alignment:
Q  236 ggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    ||||||||||||||| ||||| ||||| |||||||||| || ||||||||| ||||    
T  32252954 ggttcgaaccccgacccctacatataataatgcatgtccttatcaactgagctatg 32253009  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 40250209 - 40250248
Alignment:
Q  233 cgaggttcgaaccccgactcctacttataacaatgcatgt 272  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  40250209 cgaggttcgaaccccgactcctgcatataacaatgcatgt 40250248  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 27278773 - 27278822
Alignment:
Q  220 taaatggggtttccgaggttcgaaccccgactcctacttataacaatgca 269  Q
    |||||||||| || ||||||||||||||||| ||||| ||||| ||||||    
T  27278773 taaatggggtgtctgaggttcgaaccccgacccctacatataataatgca 27278822  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 32288448 - 32288386
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgag 286  Q
    |||||| |||||||||||||||||||  ||||| ||||| ||||||||| | |||||||||||    
T  32288448 tggggtgtccgaggttcgaaccccgatccctacatataataatgcatgtttctgtcaactgag 32288386  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 37516053 - 37515982
Alignment:
Q  233 cgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatgattacgggacaaa 304  Q
    ||||||||||||||| || ||||| ||||||||| |||||||   |||||||||||||  | ||||||||||    
T  37516053 cgaggttcgaaccccaacccctacatataacaatacatgtctacatcaactgagttatactcacgggacaaa 37515982  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 44721723 - 44721773
Alignment:
Q  220 taaatggggtttccgaggttcgaaccccgactcctacttataacaatgcat 270  Q
    |||||||||| |||||||||||||||||||| ||| | ||||| |||||||    
T  44721723 taaatggggtgtccgaggttcgaaccccgacccctgcatataataatgcat 44721773  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 16538518 - 16538571
Alignment:
Q  238 ttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||| ||||||  |||| ||||||||||||| |||||||||||| |||||||    
T  16538518 ttcgaatcccgacatctacatataacaatgcatatctttgtcaactaagttatg 16538571  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 19352904 - 19352871
Alignment:
Q  258 tataacaatgcatgtctttgtcaactgagttatg 291  Q
    ||||||||||||||||| ||||||||||||||||    
T  19352904 tataacaatgcatgtctctgtcaactgagttatg 19352871  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 45314469 - 45314424
Alignment:
Q  237 gttcgaaccccgactcctacttataacaatgcatgtctttgtcaac 282  Q
    ||||||||||||||  || | |||||||||||||||||||||||||    
T  45314469 gttcgaaccccgacctctgcatataacaatgcatgtctttgtcaac 45314424  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 25470865 - 25470936
Alignment:
Q  220 taaatggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaactgagttatg 291  Q
    |||||||||| |||||||||||||||||||| | |   ||||| |||||||||   ||||||||||||||||    
T  25470865 taaatggggtgtccgaggttcgaaccccgacccatgaatataataatgcatgttcctgtcaactgagttatg 25470936  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 1028584 - 1028635
Alignment:
Q  231 tccgaggttcgaaccccgactcctacttataacaatgcatgtctttgtcaact 283  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||  ||||||||    
T  1028584 tccgaggttcgaaccccgac-cctacatataataatgcatgtccctgtcaact 1028635  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 3465903 - 3465945
Alignment:
Q  258 tataacaatgcatgtctttgtcaactgagttatgattacggga 300  Q
    ||||| |||||||||||||||||||||||||||| | ||||||    
T  3465903 tataataatgcatgtctttgtcaactgagttatgttcacggga 3465945  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 21021 - 21054
Alignment:
Q  258 tataacaatgcatgtctttgtcaactgagttatg 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  21021 tataacaatgcatgtctttgtcaactgagctatg 21054  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 19680271 - 19680320
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtc 273  Q
    |||||| |||| ||||||||||||| ||||| | ||||||||||||||||    
T  19680271 tggggtgtccggggttcgaaccccggctcctgcatataacaatgcatgtc 19680320  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 30833089 - 30833040
Alignment:
Q  224 tggggtttccgaggttcgaaccccgactcctacttataacaatgcatgtc 273  Q
    |||||| |||| ||||||||||||||| ||| | ||||||||||||||||    
T  30833089 tggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtc 30833040  T

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