View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_63 (Length: 231)

Name: NF2057_low_63
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_63
NF2057_low_63
[»] chr1 (3 HSPs)
chr1 (14-200)||(1382041-1382225)
chr1 (14-140)||(7315560-7315685)
chr1 (161-215)||(7316787-7316841)
[»] chr5 (1 HSPs)
chr5 (161-215)||(29378772-29378826)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 1382041 - 1382225
Alignment:
Q  14 aatatataatagtttcttcttattcacaaaacccaaaactaatgggnnnnnnnnntaatttacttgttttaacatcaaatatagccaatttgttagaagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||| |||||||||||||||||     
T  1382041 aatatataatagtttcttcttattcacaaaacccaaaactaatg--aaaaaaaattaatttacttgttttaacatcaaataaagccaatttgttagaagc 1382138  T
Q  114 attcaatagaaacatttccttaataaaagtgctgtcacttgtgcatcaaactaaataaaatacttctactttgctaaatctactgta 200  Q
     || |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1382139 gttaaatataaacatttccttaataaaagtgctgtctcttgtgcatcaaactaaataaaatacttctactttgctaaatctactgta 1382225  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 7315560 - 7315685
Alignment:
Q  14 aatatataatagtttcttcttattcacaaaacccaaaactaatgggnnnnnnnnntaatttacttgttttaacatcaaatatagccaatttgttagaagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| ||||||||||||||||||||||||     
T  7315560 aatatataatagtttcttcttattcacaaaacccaaaactaatga-aaaaaaaattaatttacttgttttaacaccaaatatagccaatttgttagaagc 7315658  T
Q  114 attcaatagaaacatttccttaataaa 140  Q
     ||||| | ||||||||||||||||||    
T  7315659 gttcaacacaaacatttccttaataaa 7315685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 7316787 - 7316841
Alignment:
Q  161 aaactaaataaaatacttctactttgctaaatctactgtatttgtgccatgtatc 215  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7316787 aaactaaataaaatacttctactttgctaactctactgtatttgtgccatgtatc 7316841  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 29378772 - 29378826
Alignment:
Q  161 aaactaaataaaatacttctactttgctaaatctactgtatttgtgccatgtatc 215  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||    
T  29378772 aaactaaataaaaaacttctacttttctaaatctattgtatttgtgtcatgtatc 29378826  T

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