View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_64 (Length: 227)

Name: NF2057_low_64
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_64
NF2057_low_64
[»] chr5 (5 HSPs)
chr5 (5-221)||(25086549-25086766)
chr5 (5-221)||(25144518-25144735)
chr5 (132-209)||(19765545-19765622)
chr5 (39-105)||(24661335-24661401)
chr5 (130-178)||(23986879-23986927)
[»] chr7 (7 HSPs)
chr7 (1-181)||(10877323-10877503)
chr7 (122-207)||(10940315-10940399)
chr7 (147-212)||(5223045-5223108)
chr7 (39-180)||(14970633-14970777)
chr7 (39-180)||(15400109-15400253)
chr7 (38-180)||(8281511-8281653)
chr7 (25-110)||(5223163-5223248)
[»] scaffold0711 (1 HSPs)
scaffold0711 (32-181)||(4707-4858)
[»] chr4 (3 HSPs)
chr4 (1-187)||(15783377-15783564)
chr4 (1-180)||(15698752-15698932)
chr4 (165-209)||(15411125-15411169)
[»] chr1 (6 HSPs)
chr1 (33-181)||(25221609-25221758)
chr1 (25-113)||(18934449-18934537)
chr1 (132-180)||(22049124-22049172)
chr1 (132-181)||(16154106-16154155)
chr1 (165-209)||(22852007-22852051)
chr1 (1-84)||(22049002-22049086)
[»] chr3 (6 HSPs)
chr3 (24-209)||(4829324-4829511)
chr3 (1-181)||(1342933-1343113)
chr3 (122-180)||(16976836-16976895)
chr3 (162-212)||(13606591-13606641)
chr3 (166-209)||(14636062-14636105)
chr3 (122-180)||(24508441-24508498)
[»] chr8 (1 HSPs)
chr8 (1-181)||(17124726-17124907)
[»] chr6 (2 HSPs)
chr6 (124-180)||(9337456-9337512)
chr6 (165-209)||(13534466-13534510)
[»] scaffold0767 (1 HSPs)
scaffold0767 (133-209)||(1400-1476)
[»] scaffold0160 (1 HSPs)
scaffold0160 (165-209)||(3734-3778)
[»] scaffold1817 (1 HSPs)
scaffold1817 (162-208)||(1121-1167)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 25086766 - 25086549
Alignment:
Q  5 tctattgtaaatctcatcggcacatagctttaattttttgtaattgttgtgattgttcaagtttattaccaattag-tcaagacattttaaatcgttttt 103  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| || || |   ||||||| |||| ||||||||||| ||||||    
T  25086766 tctattttaaatctcattggcacatagctttaattttttgtaattgttgtaattgttccagcttgtattcaattaggtcaaaacattttaaattgttttt 25086667  T
Q  104 gataaaactctgtataacttttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaagtggtatcatagagtttggtct 203  Q
    ||||||||| ||||||| ||||||||| ||||||| || |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  25086666 gataaaactatgtataaattttaaaccactattcatccacctctagcgcgcaaccttattgaccatatagaccaacaagtggtatcatagagcttggtct 25086567  T
Q  204 cttcttcaaacaactatt 221  Q
    ||||||| |||| |||||    
T  25086566 cttcttcgaacagctatt 25086549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 25144735 - 25144518
Alignment:
Q  5 tctattgtaaatctcatcggcacatagctttaattttttgtaattgttgtgattgttcaagtttattaccaattag-tcaagacattttaaatcgttttt 103  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| || || |   ||||||| |||| ||||||||||| ||||||    
T  25144735 tctattttaaatctcattggcacatagctttaattttttgtaattgttgtaattgttccagcttgtattcaattaggtcaaaacattttaaattgttttt 25144636  T
Q  104 gataaaactctgtataacttttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaagtggtatcatagagtttggtct 203  Q
    ||||||||| ||||||| ||||||||| ||||||| || |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  25144635 gataaaactatgtataaattttaaaccactattcatccacctctagcgcgcaaccttattgaccatatagaccaacaagtggtatcatagagcttggtct 25144536  T
Q  204 cttcttcaaacaactatt 221  Q
    ||||||| |||| |||||    
T  25144535 cttcttcgaacagctatt 25144518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 19765545 - 19765622
Alignment:
Q  132 ctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    ||||| |||||| ||||||  |||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||    
T  19765545 ctattaacccccatctagcttgcaaccttattggacatatagaacaacaagtggtatcatagagcttggtctcttctt 19765622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 24661335 - 24661401
Alignment:
Q  39 tttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttga 105  Q
    ||||||||||||||||||||||||||  || ||  ||||||||||| |||||| |||| | ||||||    
T  24661335 tttttgtaattgttgtgattgttcaatcttgttttcaattagtcaaaacatttcaaatagattttga 24661401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 23986927 - 23986879
Alignment:
Q  130 cgctattcacccccctctagcgcgcaaccttgttggccatatagaccaa 178  Q
    ||||||||||||||||||||||| | ||||| || ||||||| ||||||    
T  23986927 cgctattcacccccctctagcgcactaccttattagccatattgaccaa 23986879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 10877503 - 10877323
Alignment:
Q  1 caattctattgtaaatctcatcggcacatagctttaattttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtt 100  Q
    ||||||||||||||||||||| |||||||||  |||| |||||||||| |||||||||||||||| || ||  ||||||||||| |||||| |||||| |    
T  10877503 caattctattgtaaatctcattggcacatagtcttaactttttgtaatagttgtgattgttcaagcttgttttcaattagtcaaaacatttcaaatcgat 10877404  T
Q  101 tttgataaaactctgtataactttt-aaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaa 181  Q
    |||| |||||||| ||| ||||||| |||  |||||||| ||||||||||||||||||||  || |||||||||||||||||    
T  10877403 tttgctaaaactccgtaaaacttttaaaattgctattca-ccccctctagcgcgcaacctcattagccatatagaccaacaa 10877323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 10940315 - 10940399
Alignment:
Q  122 ttttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaagtggtatcatagagtttggtctcttc 207  Q
    ||||||| |||||||||||||| | |||| | || |||| ||| |||||||||||||||||||||||| |||||||||||||||||    
T  10940315 ttttaaatcgctattcacccccttttagcacacatccttattgaccatatagaccaacaagtggtatc-tagagtttggtctcttc 10940399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 5223108 - 5223045
Alignment:
Q  147 tagcgcgcaaccttgttggccatatagaccaacaagtggtatcatagagtttggtctcttcttcaa 212  Q
    |||||||||||||| |||||||||  || |||||||||||||||||||| ||||||||||||||||    
T  5223108 tagcgcgcaaccttattggccata--gatcaacaagtggtatcatagagcttggtctcttcttcaa 5223045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 14970777 - 14970633
Alignment:
Q  39 tttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaactctgt--ataacttttaaaccgctatt 136  Q
    ||||||||| |||||||||| |||||| || ||  ||||||||||| |||||| |||| | ||||||||||| || ||  | ||  || |||  ||||||    
T  14970777 tttttgtaagtgttgtgatttttcaagcttgtttgcaattagtcaaaacatttcaaattgattttgataaaaatccgtaaaaaaaattcaaagagctatt 14970678  T
Q  137 ca-cccccctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
    || ||||||||||||  |||||||| |||||||||||||||||||    
T  14970677 catcccccctctagctagcaaccttattggccatatagaccaaca 14970633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 15400253 - 15400109
Alignment:
Q  39 tttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaactctgt--ataacttttaaaccgctatt 136  Q
    ||||||||| |||||||||| |||||| || ||  ||||||||||| |||||| |||| | ||||||||||| || ||  | ||  || |||  ||||||    
T  15400253 tttttgtaagtgttgtgatttttcaagcttgtttgcaattagtcaaaacatttcaaattgattttgataaaaatccgtaaaaaaaattcaaagagctatt 15400154  T
Q  137 ca-cccccctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
    || ||||||||||||  |||||||| |||||||||||||||||||    
T  15400153 catcccccctctagctagcaaccttattggccatatagaccaaca 15400109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 8281511 - 8281653
Alignment:
Q  38 ttttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaactctgt---ataacttttaaaccgcta 134  Q
    |||||||||||||||||||||||||||| || |  |||||||||||| || ||| |||||   |||||||||||| |||   | || ||| |||||||||    
T  8281511 ttttttgtaattgttgtgattgttcaagcttgtatccaattagtcaaaacctttcaaatc--atttgataaaactttgtaaaaaaaatttaaaaccgcta 8281608  T
Q  135 ttcacccccctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
    || || ||||| |||||||| ||| | |||||||| ||||||||||    
T  8281609 tttactcccctttagcgcgc-accgtattggccatgtagaccaaca 8281653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 5223248 - 5223163
Alignment:
Q  25 cacatagctttaattttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaa 110  Q
    |||||| ||||||  |||||||||||||||||||| | ||    ||| |||||||||||| || ||| ||||||||||||||||||    
T  5223248 cacataactttaacattttgtaattgttgtgattgcttaatcaaatttccaattagtcaaaacttttcaaatcgtttttgataaaa 5223163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 4707 - 4858
Alignment:
Q  32 ctttaattttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaactctgtataactttt-aaacc 130  Q
    |||||| ||||||||||||||||||||||||||  || || |||||||||||| |||||| ||||| |||||| |||||||| ||| ||||||| |||||    
T  4707 ctttaactttttgtaattgttgtgattgttcaatcttgtttccaattagtcaaaacatttcaaatcatttttggtaaaactccgtaaaacttttaaaacc 4806  T
Q  131 gctattcacccccct-ctagcgcgcaaccttgttggccatatagaccaacaa 181  Q
    |||||| |||| ||| ||||||||||||||| ||||| ||||||||||||||    
T  4807 gctattgacccacctcctagcgcgcaaccttattggctatatagaccaacaa 4858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 15783377 - 15783564
Alignment:
Q  1 caattctattgtaaatctcatcggcacatagctttaattttttgtaattgtt-gtgattgttcaagtttattaccaattagtcaagacattttaaatcgt 99  Q
    |||||||||||||||||| ||  ||||||||  |||| |||||||||||||| ||||||||||||| || ||  ||||||||||| |||||| ||||||     
T  15783377 caattctattgtaaatcttattagcacatagtcttaactttttgtaattgtttgtgattgttcaagcttcttttcaattagtcaaaacatttcaaatcgc 15783476  T
Q  100 ttttgataaaactctgtataactt-ttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaagtggta 187  Q
    ||| | ||||| || ||| || |  ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||    
T  15783477 tttcgctaaaattccgtaaaaataattaaaccgctattcacccc-ctctagcgcgcaacctaattggccatatagaccaacaattggta 15783564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 15698932 - 15698752
Alignment:
Q  1 caattctattgtaaatctcatcggcacatagc--tttaattttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcg 98  Q
    ||||||||||| |||| |||| | |||||||   ||||| ||||||||||||||||||||||||||| || || |||||||||||| || ||| |||||     
T  15698932 caattctattgaaaatttcattgacacatagtcttttaactttttgtaattgttgtgattgttcaagcttctttccaattagtcaaaacctttcaaatc- 15698834  T
Q  99 tttttgataaaactctgtataactttt--aaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
     |||||||||||||| ||| |||||||  |||| |||||||| ||||||||||||| | ||| | |||||||||||||||||||    
T  15698833 attttgataaaactccgtaaaactttttaaaactgctattca-ccccctctagcgcac-accatattggccatatagaccaaca 15698752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 15411169 - 15411125
Alignment:
Q  165 gccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||    
T  15411169 gccatattgaccaacaagtggtatcatagagcttggtctcttctt 15411125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 25221609 - 25221758
Alignment:
Q  33 tttaattttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaactctgtataa-cttttaaaccg 131  Q
    ||||| |||||||||||||||||||||||||| ||| || ||||||| |||| | |||| |||||||||| |||| ||||||||| || |||| |||  |    
T  25221609 tttaactttttgtaattgttgtgattgttcaaatttgtttccaattaatcaaaatatttcaaatcgttttggatataactctgtaaaacctttcaaaaag 25221708  T
Q  132 ctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaa 181  Q
    ||||||||||||||||| |  |||||||| ||||||||||||||||||||    
T  25221709 ctattcacccccctctaacttgcaaccttattggccatatagaccaacaa 25221758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 18934537 - 18934449
Alignment:
Q  25 cacatagctttaattttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaactc 113  Q
    |||||||  ||||||||||||||||||||||||||||||||||| || |||||||||||| ||| || |||||| ||| | ||||||||    
T  18934537 cacatagtcttaattttttgtaattgttgtgattgttcaagtttgtttccaattagtcaaaacaattcaaatcgctttcgctaaaactc 18934449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 22049124 - 22049172
Alignment:
Q  132 ctattcacccccctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||    
T  22049124 ctattcacccccctctagtgcgcaaccttgttggctatatagaccaaca 22049172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 16154106 - 16154155
Alignment:
Q  132 ctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaa 181  Q
    |||||||| ||||||||||| |||||||| |||||||||| |||||||||    
T  16154106 ctattcactcccctctagcgtgcaaccttattggccatatcgaccaacaa 16154155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 22852051 - 22852007
Alignment:
Q  165 gccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    |||||||| |||||||||||||||||||||  |||||||||||||    
T  22852051 gccatatataccaacaagtggtatcatagatcttggtctcttctt 22852007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 22049002 - 22049086
Alignment:
Q  1 caattctattgtaaatctcatcggcacatagctttaattttttgtaattg-ttgtgattgttcaagtttattaccaattagtcaa 84  Q
    |||||||| ||||||||||||  | |||||| ||||| ||||| | |||| ||||||||||||||| |  || ||||||||||||    
T  22049002 caattctactgtaaatctcattagaacatagttttaactttttatgattgtttgtgattgttcaagctcgtttccaattagtcaa 22049086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 4829511 - 4829324
Alignment:
Q  24 gcacatagctttaattttttgtaa-ttgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgtttttgataaaactctgtataact 122  Q
    |||||||||||||  |||||| || |||||||||||||||||| ||  | ||||| ||||||  || || ||||| |||||| |||||||| | | ||||    
T  4829511 gcacatagctttatctttttgcaaattgttgtgattgttcaagcttgcttccaat-agtcaaatcaattcaaatcttttttgttaaaactccgaaaaact 4829413  T
Q  123 ttta--aaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    ||    ||||||||||||||||||||||||| |||||||| |||||||||| || || ||||||||||||| ||| |||||||||||||    
T  4829412 ttatctaaccgctattcacccccctctagcgtgcaaccttattggccatatcgatcagcaagtggtatcatcgaggttggtctcttctt 4829324  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 1343113 - 1342933
Alignment:
Q  1 caattctattgtaaatctcatcggcacatagctttaattttttgtaattgtt-gtgattgttcaagtttattaccaattagtcaagacattttaaatcgt 99  Q
    |||||||||||||||||| ||  | |||||   |||| ||||| | |||||| ||||||||||||| |||||  ||||||||||| |||||| ||| |      
T  1343113 caattctattgtaaatcttattagtacataatattaactttttttgattgtttgtgattgttcaagcttattttcaattagtcaaaacatttcaaaacac 1343014  T
Q  100 ttttgataaaactctgtataacttttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaa 181  Q
    ||| |   |||||| ||| |  |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  1343013 tttcgccgaaactccgtaaattttttaaaccgctattcaccccc-tctaacgcgcaaccttattggccatatagaccaacaa 1342933  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 16976836 - 16976895
Alignment:
Q  122 ttttaaaccgctattcacccc-cctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
    ||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  16976836 ttttaaatcgctattcaccccccctctagcgcgcatccttattggccatatagaccaaca 16976895  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 13606641 - 13606591
Alignment:
Q  162 ttggccatatagaccaacaagtggtatcatagagtttggtctcttcttcaa 212  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  13606641 ttggccatatagaccaataattggtatcatagagcttggtctcttcttcaa 13606591  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 14636105 - 14636062
Alignment:
Q  166 ccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  14636105 ccatatagaacaacaagtgatatcatagagtttggtctcttctt 14636062  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 24508441 - 24508498
Alignment:
Q  122 ttttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
    ||||||| ||||||||||||| |||||||||||| | || |||||||||||||||||||    
T  24508441 ttttaaatcgctattcacccc-ctctagcgcgcatctttattggccatatagaccaaca 24508498  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 17124907 - 17124726
Alignment:
Q  1 caattctattgtaaatctcatcggcacatag-ctttaattttttgtaattgttgtgattgttcaagtttattaccaattagtcaagacattttaaatcgt 99  Q
    ||||||||||||||| |||||   ||| ||| |||||| ||||||||||||||||||||||||||| || || |||||||||||| ||| || |||| ||    
T  17124907 caattctattgtaaacctcattatcacgtagtctttaactttttgtaattgttgtgattgttcaagcttgtttccaattagtcaaaacaattcaaatagt 17124808  T
Q  100 ttttgataaaactctgt-ataacttttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaacaa 181  Q
    |||||| |||| || || | ||  |||||| |  |||||| |||||||||||||| || ||| ||||||||||||||||||||    
T  17124807 ttttgacaaaattccgtaaaaaaatttaaatcattattca-ccccctctagcgcgtaatcttattggccatatagaccaacaa 17124726  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 9337512 - 9337456
Alignment:
Q  124 ttaaaccgctattcacccccctctagcgcgcaaccttgttggccatatagaccaaca 180  Q
    ||||| |||||||||||||||||||||||||  |||| ||||||||||||| |||||    
T  9337512 ttaaatcgctattcacccccctctagcgcgcgtccttattggccatatagagcaaca 9337456  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 13534510 - 13534466
Alignment:
Q  165 gccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    |||||||||||||||||||| ||||||||   |||||||||||||    
T  13534510 gccatatagaccaacaagtgatatcatagcacttggtctcttctt 13534466  T

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Target: scaffold0767 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 1476 - 1400
Alignment:
Q  133 tattcacccccctctagcgcgcaaccttgttggccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    ||||||||||||| |||  | | ||||| || ||||||| |||||||||||||| | |||||| |||||||||||||    
T  1476 tattcacccccctttagatccctaccttattagccatattgaccaacaagtggttttatagagcttggtctcttctt 1400  T

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Target: scaffold0160 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 3734 - 3778
Alignment:
Q  165 gccatatagaccaacaagtggtatcatagagtttggtctcttctt 209  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||    
T  3734 gccatatagatcaacaagtggtatcatagagcttggcctcttctt 3778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1817 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1817
Description:

Target: scaffold1817; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 1167 - 1121
Alignment:
Q  162 ttggccatatagaccaacaagtggtatcatagagtttggtctcttct 208  Q
    ||||||||||||||||| || ||||||||||||  ||||||||||||    
T  1167 ttggccatatagaccaataaatggtatcatagaacttggtctcttct 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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