View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2057_low_65 (Length: 224)
Name: NF2057_low_65
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_65 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 143563 - 143340
Alignment:
| Q |
1 |
ggatcacgaaaatacactgatctcaacattcccatataatgtttccaccggttattataatgttcattcatttccttaatgatctttccataacaatttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
143563 |
ggatcacgaaaatacactgatctcaacattcccatataatgtttccaccagttattataatgttcattcatttctttaatgatctttccataacaatttg |
143464 |
T |
|
| Q |
101 |
atgtcaccacaacatatttgcaaagaccattaaccaatgttgccaattctgcatgacttccaagttcatggctaatgatttctgtgtcaaccaacaactc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143463 |
atgtcaccacaacatatttgcatagaccattaaccaatgttgccaattctgcatgacttccaagttcatggctaatgatttctgtgtcaaccaacaactc |
143364 |
T |
|
| Q |
201 |
aacatcttcgtgtgtatgaatcaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
143363 |
aacatcttcgtgtgtatgaatcaa |
143340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 106278 - 106486
Alignment:
| Q |
1 |
ggatcacgaaaatacactgatctcaacattcccatataatgtttccaccggttattataatgttcattcatttccttaatgatctttccataacaatttg |
100 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||| ||||| ||||| ||||| ||||||| | ||| | | ||||||||| |||| |
|
|
| T |
106278 |
ggatcacgaaaataaactgatctcagcattcccatataatgcttccaatagttatagtaatgatcattcaaattctttgaggtttttccataataattac |
106377 |
T |
|
| Q |
101 |
atgtcaccacaacatatttgcaaagaccattaaccaatgttgccaattctgcatgacttccaagttcatggctaatgatttctgtgtcaaccaacaactc |
200 |
Q |
| |
|
|||| |||||||||| || ||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
106378 |
atgttaccacaacattcttacaaagaccatttatcatagttgccaattctgcatgacttccaagttcatgaacaatgatttccttatcaaccaacaactc |
106477 |
T |
|
| Q |
201 |
aacatcttc |
209 |
Q |
| |
|
|||||||| |
|
|
| T |
106478 |
cacatcttc |
106486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45958098 - 45958319
Alignment:
| Q |
1 |
ggatcacgaaaatacactgatctcaacattcccatataatgtttccaccggttattataatgttcattcatttccttaatgatctttccat-aacaattt |
99 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45958098 |
ggatcacgaaagtacactgaccttaacattcccatataatgtttccaccagttattataatgttcattcatttccttaatgatctttccattaacaattt |
45958197 |
T |
|
| Q |
100 |
gatgtcaccacaacatatttgcaaagaccattaaccaatgttgccaattctgcatgacttccaagttcatggctaatgatttctgtgtcaaccaacaact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45958198 |
gatgtcaccacaacatatttgcaaagaccattaaccaatgttgccaattctgcatgacttccaagttcatggctaatgatttctgtgtcaaccaacaact |
45958297 |
T |
|
| Q |
200 |
caacatcttcgtgtgtatgaat |
221 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
45958298 |
caacattttcatgtgtatgaat |
45958319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University