View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_low_7 (Length: 506)

Name: NF2057_low_7
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_low_7
NF2057_low_7
[»] chr2 (25 HSPs)
chr2 (40-491)||(938464-938915)
chr2 (84-171)||(7103480-7103568)
chr2 (95-171)||(18066113-18066189)
chr2 (49-172)||(9556223-9556346)
chr2 (95-171)||(22681194-22681270)
chr2 (58-171)||(33942135-33942250)
chr2 (62-145)||(34652012-34652095)
chr2 (93-167)||(6993731-6993805)
chr2 (95-157)||(9174814-9174876)
chr2 (71-171)||(15377750-15377851)
chr2 (67-168)||(10285848-10285949)
chr2 (112-169)||(16353848-16353905)
chr2 (109-157)||(10884544-10884592)
chr2 (131-171)||(25800814-25800854)
chr2 (104-171)||(3078658-3078725)
chr2 (96-171)||(11513883-11513958)
chr2 (59-164)||(1742005-1742110)
chr2 (189-222)||(2400087-2400120)
chr2 (112-169)||(13736319-13736376)
chr2 (112-169)||(39983329-39983386)
chr2 (111-171)||(680488-680548)
chr2 (113-169)||(8017421-8017477)
chr2 (93-169)||(18179247-18179323)
chr2 (109-145)||(36863648-36863684)
chr2 (111-171)||(41875678-41875738)
[»] chr4 (23 HSPs)
chr4 (58-171)||(2996558-2996671)
chr4 (109-171)||(35571654-35571716)
chr4 (59-169)||(53315313-53315423)
chr4 (111-171)||(36048518-36048578)
chr4 (114-171)||(20031734-20031791)
chr4 (65-142)||(28614787-28614864)
chr4 (58-171)||(44319934-44320047)
chr4 (95-171)||(1706607-1706683)
chr4 (111-171)||(30207596-30207656)
chr4 (96-163)||(16199991-16200058)
chr4 (314-349)||(17822756-17822791)
chr4 (104-171)||(17975387-17975454)
chr4 (131-222)||(50298462-50298552)
chr4 (80-145)||(4471179-4471244)
chr4 (58-167)||(11264290-11264399)
chr4 (104-145)||(54261087-54261128)
chr4 (66-142)||(1965955-1966031)
chr4 (58-138)||(6987713-6987793)
chr4 (111-167)||(11158382-11158438)
chr4 (95-163)||(17822874-17822942)
chr4 (111-171)||(29778780-29778840)
chr4 (131-171)||(47119010-47119050)
chr4 (96-156)||(52259631-52259691)
[»] chr6 (15 HSPs)
chr6 (58-171)||(281820-281933)
chr6 (65-145)||(2455821-2455901)
chr6 (59-171)||(4246395-4246507)
chr6 (38-128)||(9027606-9027696)
chr6 (104-145)||(6647398-6647439)
chr6 (65-165)||(7148657-7148757)
chr6 (111-171)||(9093581-9093641)
chr6 (111-171)||(31671099-31671159)
chr6 (112-171)||(7446357-7446416)
chr6 (78-171)||(25100028-25100121)
chr6 (37-126)||(32171334-32171423)
chr6 (111-171)||(1275134-1275194)
chr6 (111-171)||(1497966-1498026)
chr6 (123-171)||(28088259-28088307)
chr6 (111-163)||(31812038-31812090)
[»] chr5 (22 HSPs)
chr5 (58-171)||(32172638-32172751)
chr5 (95-171)||(39105449-39105525)
chr5 (60-171)||(36542256-36542367)
chr5 (122-171)||(12975332-12975381)
chr5 (82-169)||(2568645-2568732)
chr5 (104-171)||(12425556-12425623)
chr5 (62-171)||(13604825-13604934)
chr5 (103-171)||(28776978-28777046)
chr5 (111-174)||(6183426-6183489)
chr5 (112-167)||(15003540-15003595)
chr5 (82-162)||(34736333-34736415)
chr5 (65-171)||(41957430-41957536)
chr5 (122-171)||(14295491-14295540)
chr5 (82-171)||(21768193-21768282)
chr5 (58-171)||(28586738-28586851)
chr5 (189-222)||(40048386-40048419)
chr5 (126-163)||(41016570-41016607)
chr5 (59-171)||(2569668-2569780)
chr5 (111-163)||(6593292-6593344)
chr5 (111-171)||(7319391-7319451)
chr5 (111-171)||(9202773-9202833)
chr5 (111-171)||(10272456-10272516)
[»] chr8 (24 HSPs)
chr8 (58-137)||(31875567-31875646)
chr8 (64-145)||(26473730-26473811)
chr8 (58-163)||(31862486-31862590)
chr8 (111-171)||(8062509-8062569)
chr8 (95-163)||(27028824-27028892)
chr8 (93-169)||(38874633-38874709)
chr8 (58-156)||(5069697-5069795)
chr8 (58-164)||(18931270-18931376)
chr8 (70-167)||(39551193-39551290)
chr8 (111-163)||(8062322-8062374)
chr8 (105-169)||(10075570-10075634)
chr8 (52-108)||(30987957-30988013)
chr8 (58-169)||(11415141-11415252)
chr8 (56-131)||(27645929-27646004)
chr8 (103-161)||(1433543-1433601)
chr8 (58-164)||(6509275-6509381)
chr8 (112-169)||(4558785-4558842)
chr8 (189-222)||(11188261-11188294)
chr8 (82-171)||(12361177-12361266)
chr8 (80-145)||(21653092-21653157)
chr8 (189-222)||(26813911-26813944)
chr8 (82-126)||(8823374-8823418)
chr8 (131-171)||(9834834-9834874)
chr8 (242-286)||(40859858-40859902)
[»] chr1 (27 HSPs)
chr1 (82-169)||(4622080-4622167)
chr1 (82-168)||(28482229-28482315)
chr1 (93-167)||(39270432-39270506)
chr1 (82-163)||(7136994-7137075)
chr1 (80-137)||(31294515-31294572)
chr1 (111-168)||(31517765-31517822)
chr1 (111-167)||(25479570-25479626)
chr1 (111-171)||(44422684-44422744)
chr1 (111-171)||(49888752-49888812)
chr1 (104-155)||(4548722-4548773)
chr1 (104-171)||(7218092-7218159)
chr1 (122-169)||(23902103-23902150)
chr1 (104-171)||(29793767-29793834)
chr1 (58-145)||(52190140-52190227)
chr1 (256-286)||(3234173-3234203)
chr1 (111-169)||(37241847-37241905)
chr1 (58-164)||(38867803-38867909)
chr1 (122-171)||(5421956-5422005)
chr1 (58-171)||(5591938-5592051)
chr1 (104-145)||(19389912-19389953)
chr1 (122-171)||(25005833-25005882)
chr1 (126-171)||(25006074-25006119)
chr1 (82-163)||(34290229-34290310)
chr1 (111-163)||(7472304-7472356)
chr1 (133-169)||(9656637-9656673)
chr1 (131-171)||(12564919-12564959)
chr1 (95-163)||(24915060-24915128)
[»] chr7 (15 HSPs)
chr7 (65-171)||(21453279-21453385)
chr7 (95-171)||(38010699-38010775)
chr7 (112-171)||(30456476-30456535)
chr7 (105-171)||(47177621-47177687)
chr7 (80-145)||(529386-529451)
chr7 (122-171)||(28340880-28340929)
chr7 (95-221)||(28165023-28165152)
chr7 (65-200)||(36370625-36370760)
chr7 (111-169)||(40689011-40689069)
chr7 (104-145)||(25596044-25596085)
chr7 (111-176)||(30812128-30812193)
chr7 (131-171)||(27548248-27548288)
chr7 (62-169)||(33645937-33646044)
chr7 (104-160)||(33678776-33678832)
chr7 (104-171)||(46825083-46825151)
[»] chr3 (14 HSPs)
chr3 (58-169)||(25182959-25183071)
chr3 (95-171)||(52618988-52619064)
chr3 (112-171)||(20669604-20669663)
chr3 (58-145)||(37273145-37273232)
chr3 (58-160)||(24280707-24280805)
chr3 (131-171)||(33405212-33405252)
chr3 (104-163)||(39602228-39602287)
chr3 (111-145)||(34924563-34924597)
chr3 (122-167)||(11253491-11253535)
chr3 (111-176)||(20502093-20502158)
chr3 (193-222)||(26878048-26878077)
chr3 (110-163)||(47319295-47319348)
chr3 (131-171)||(2201113-2201153)
chr3 (59-171)||(36646355-36646467)


Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 40 - 491
Target Start/End: Original strand, 938464 - 938915
Alignment:
Q  40 ataatcacgtgcgagtccgtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagct 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  938464 ataatcacgtgcgagtccgtttgagagagcttatggaagaaacttatgacaaatccataagccattttaaacttattttcagaagctctctaagatagct 938563  T
Q  140 tatgaataccgcttatagcttatatgaaaacactttttctatttttaacttgttatagaaacaatttatacataagcacttatgctatgactatgagcac 239  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  938564 tatgaataccgcttatagcttatatgaaaaaactttttctatttttaacttgttatagaaacaatttatacataagcacttatgctatgactatgagcac 938663  T
Q  240 tcagggcctgtttggatttgcaacttatagcacaagcgcttatcatgtggcaatccaaataagccaatccaaagtccaaacaggccttaattaagtagtt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  938664 tcagggcctgtttggatttgcaacttatagcacaagcgcttatcatatggcaatccaaataagccaatccaaagtccaaacaggccttaattaagtagtt 938763  T
Q  340 tatccaaacatggctacatatggtaaggaaaaagaaatggaataataccttagtttgcaagattgactgagaggtagtgtatataagctcccatttgcca 439  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  938764 tatccaaacatggctacatatggcaaggaaaaagaaatggaataataccttagtttgcaagattgactgagaggtagtgtatataagctcccatttgcca 938863  T
Q  440 tcaagtaaactagacttaagaggctgctttgttggattaactgcttcaagtt 491  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  938864 tcaagtaaactagacttgagaggctgctttgttggattaactgcttcaagtt 938915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 7103480 - 7103568
Alignment:
Q  84 tatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatg-aataccgcttatagcttatatgaaaaca 171  Q
    ||||||| |||||||||   |||||| |||||||||| || ||||||||||||||||||| || || ||||||||||||||| ||||||    
T  7103480 tatgacatatccataagttgtttttagcttattttcacaaactctctaagatagcttatgaaaaacagcttatagcttatattaaaaca 7103568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 18066189 - 18066113
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| ||||| | |||||||||  ||| |||| ||||||||||||||| || ||||||||||||||||||||||    
T  18066189 cataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaaca 18066113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 9556346 - 9556223
Alignment:
Q  49 tgcgagtccgtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaatac 148  Q
    |||||||| | ||| ||||||||||| ||  |||| ||||||  ||||||||    ||| |||||||||||| ||||| |||| ||||||||||||| ||    
T  9556346 tgcgagtctgattgggagagcttatgaaaacaactaatgacatgtccataagtagatttcaacttattttcataagctttctaggatagcttatgaaaac 9556247  T
Q  149 cgcttatagcttatatgaaaacac 172  Q
     | ||||||||| |||||||||||    
T  9556246 agtttatagcttgtatgaaaacac 9556223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 22681194 - 22681270
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||  |||||| ||||||| || ||| |||||| ||||| ||||||| || ||||||||||||||||||||||    
T  22681194 cataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaaca 22681270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 33942250 - 33942135
Alignment:
Q  58 gtttgagagagcttatgga-aga-aacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttat 155  Q
    ||||||||||||||||||| ||| |||||||||||  | |||||||  |||| | || |||||||  ||||||||| ||| ||||||||| ||  |||||    
T  33942250 gtttgagagagcttatggagagacaacttatgacatgttcataagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaacttat 33942151  T
Q  156 agcttatatgaaaaca 171  Q
    |||||| |||||||||    
T  33942150 agcttacatgaaaaca 33942135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 34652012 - 34652095
Alignment:
Q  62 gagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||| ||||||| |||  |||||||||||  |||||||||  |||| ||||||||| || |||||||| |||||||||||||||    
T  34652012 gagaaagcttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaa 34652095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 6993731 - 6993805
Alignment:
Q  93 tccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaa 167  Q
    |||||||| |||||||| |||||||||| |||||||| |  |||||||||||| ||  | |||||||||||||||    
T  6993731 tccataagtcatttttagcttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatatgaa 6993805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 9174876 - 9174814
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||||| ||||| | |||||||||| ||||||| |||||||||||||||| || ||||||||    
T  9174876 cataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatag 9174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 15377851 - 15377750
Alignment:
Q  71 tatggaagaaacttatgacaaatccataagccatttttaactt-attttcagaagctctctaaga-tagcttatgaataccgcttatagcttatatgaaa 168  Q
    |||||||  |||||||||||  ||||||||| |||||||| || ||||||| |||||| || ||| ||||||||||| || ||||||| |||||||||||    
T  15377851 tatggaaacaacttatgacacgtccataagctatttttaagtttattttcataagctc-ctcagaatagcttatgaaaacagcttataacttatatgaaa 15377753  T
Q  169 aca 171  Q
    |||    
T  15377752 aca 15377750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 10285949 - 10285848
Alignment:
Q  67 agcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatga 166  Q
    |||||||| ||  |||||||||||  |||||||||  |||| ||||||||| || ||| |||||| | ||||||||| | ||  ||||||||||||||||    
T  10285949 agcttatgaaaataacttatgacatgtccataagctgttttcaacttatttccataagttctctatgttagcttatgcaaacgacttatagcttatatga 10285850  T
Q  167 aa 168  Q
    ||    
T  10285849 aa 10285848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 16353905 - 16353848
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||||||| ||| |||| |||||||||||| || || ||||||||||||||||||||    
T  16353905 ttattttcacaagatctccaagatagcttataaaaacagcttatagcttatatgaaaa 16353848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 10884544 - 10884592
Alignment:
Q  109 aacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    |||||||||||| |||||||||| ||||||||||||| || ||||||||    
T  10884544 aacttattttcataagctctctaggatagcttatgaaaacagcttatag 10884592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 25800854 - 25800814
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  25800854 aagatagcttatgaaaacagcttatagcttatatgaaaaca 25800814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 3078658 - 3078725
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||| ||||||| ||||||||||| |||||||||||| || || ||||||  | ||||||||||||    
T  3078658 tttttagcttatttccagaagctctccaagatagcttataaaaacagcttattacatatatgaaaaca 3078725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 11513958 - 11513883
Alignment:
Q  96 ataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||| ||||| | ||||||| || ||| |||| | ||||||||||||| ||  |||||||||||||||||||||    
T  11513958 ataagctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaaca 11513883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 1742005 - 1742110
Alignment:
Q  59 tttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagc 158  Q
    |||| ||||||||||||||  |||||||||||  | ||||||| || || ||||||||| || || ||||  | ||||| ||||||| || ||||||| |    
T  1742005 tttgggagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaacagcttatatc 1742104  T
Q  159 ttatat 164  Q
    ||||||    
T  1742105 ttatat 1742110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 2400120 - 2400087
Alignment:
Q  189 ttgttatagaaacaatttatacataagcacttat 222  Q
    ||||||||||||||| ||||||||||||||||||    
T  2400120 ttgttatagaaacaacttatacataagcacttat 2400087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 13736319 - 13736376
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||||||| ||||||||||  |||||||||||| || |||||||||| || ||||||    
T  13736319 ttattttcataagctctctagtatagcttatgaaaacagcttatagctgatgtgaaaa 13736376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 39983386 - 39983329
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    |||||||||  ||||||| | ||||||||||||| ||  |||||||||||||||||||    
T  39983386 ttattttcattagctctccaggatagcttatgaaaacaacttatagcttatatgaaaa 39983329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 680548 - 680488
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| ||| |||  ||||||||||||||| |  |||||||||||||| |||||||    
T  680548 cttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaaaca 680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 8017477 - 8017421
Alignment:
Q  113 tattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    |||||||| ||| |||| ||||||||||||||| || | ||| ||||||||||||||    
T  8017477 tattttcataagttctccaagatagcttatgaaaacagtttacagcttatatgaaaa 8017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 18179247 - 18179323
Alignment:
Q  93 tccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||| ||| ||||| | |||||||||  ||| |||| | |||||||||||||  | ||||||||||||||||||||    
T  18179247 tccattagctattttcagcttattttcgtaagttctccaggatagcttatgaaagcagcttatagcttatatgaaaa 18179323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 36863648 - 36863684
Alignment:
Q  109 aacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||||||||||| |||||||| |||||||||||||||    
T  36863648 aacttattttcataagctctccaagatagcttatgaa 36863684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 41875678 - 41875738
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||  |||||| | ||||||||||||||| || ||||| |||||||| |||||||    
T  41875678 cttattttcttaagctcaccaagatagcttatgaaaacagcttacagcttatacgaaaaca 41875738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 2996671 - 2996558
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||||||||||||||| ||  |||||||||||  |||||||||  |||| |||||||||||| | |||||| ||||||||||||||| ||  ||||||     
T  2996671 gtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataa 2996572  T
Q  158 cttatatgaaaaca 171  Q
    ||||||| ||||||    
T  2996571 cttatataaaaaca 2996558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 35571654 - 35571716
Alignment:
Q  109 aacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||||| ||| |||||||||||||||||||| || |||||||||||||| |||||||    
T  35571654 aacttattttcacaagttctctaagatagcttatgaaaacagcttatagcttatacgaaaaca 35571716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 53315423 - 53315313
Alignment:
Q  59 tttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagc 158  Q
    |||| ||||||||||| ||  ||| ||| |||  ||||||||| |||||||||||||||||| |||||||||| | | | || |||  || |||||||||    
T  53315423 tttgtgagagcttatgaaaacaacatatcacatgtccataagctatttttaacttattttcataagctctctaggtttgtttttgagaacagcttatagc 53315324  T
Q  159 ttatatgaaaa 169  Q
    |||||||||||    
T  53315323 ttatatgaaaa 53315313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 36048578 - 36048518
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| || ||||||||||||||||||| |||| |  ||||||||||||||||||||||    
T  36048578 cttatttccataagctctctaagatagcttttgaaaatagcttatagcttatatgaaaaca 36048518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 20031791 - 20031734
Alignment:
Q  114 attttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| ||| ||||||| |||||||||||| || |||||||||||| |||||||||    
T  20031791 attttcataagttctctaaaatagcttatgaaaactgcttatagcttacatgaaaaca 20031734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 28614787 - 28614864
Alignment:
Q  65 agagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttat 142  Q
    |||||||||||||  || |||||||| ||||||||||  |||| | |||||||||| ||| |||||| ||||||||||    
T  28614787 agagcttatggaaacaatttatgacatatccataagctcttttcagcttattttcataagttctctaggatagcttat 28614864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 44320047 - 44319934
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||| ||||||||||| ||  || ||||||   |||||| ||| ||||| |||| ||||||| ||| |||||| |||||||||| || |  |||| |||    
T  44320047 gtttgggagagcttatgaaaacaaattatgatgtatccattagctattttcaactaattttcataagttctctaggatagcttatcaaaatagcttgtag 44319948  T
Q  158 cttatatgaaaaca 171  Q
    ||||||||||||||    
T  44319947 cttatatgaaaaca 44319934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 1706683 - 1706607
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| ||||  |||||||||||| ||||| || ||||||| ||||||| || ||||||||||| || |||||||    
T  1706683 cataagctatttccaacttattttcataagctgtccaagatagtttatgaaaacagcttatagcttctacgaaaaca 1706607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 30207596 - 30207656
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| || || ||||||||| ||||||||||| ||  |||||||||||||||||||||    
T  30207596 cttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaaca 30207656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 16199991 - 16200058
Alignment:
Q  96 ataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    ||||||| |||||| |||||||||| |||  ||| ||||||||||||||| || ||||||||| ||||    
T  16199991 ataagccttttttagcttattttcataagtcctccaagatagcttatgaaaacagcttatagcatata 16200058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 17822791 - 17822756
Alignment:
Q  314 tccaaacaggccttaattaagtagtttatccaaaca 349  Q
    |||||||||||||||||||||| |||||||||||||    
T  17822791 tccaaacaggccttaattaagttgtttatccaaaca 17822756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 17975387 - 17975454
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||| ||||||| ||||||||||| |||||||||||| || || ||||||  | ||||||||||||    
T  17975387 tttttagcttatttccagaagctctccaagatagcttataaaaacagcttattacatatatgaaaaca 17975454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 50298552 - 50298462
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaacactttttctatttttaacttgttatagaaacaatttatacataagcacttat 222  Q
    ||||| ||||||||| || | ||||||||||| |||||||| |||  || || ||| |||||||| ||||||| ||||||||||||| ||||    
T  50298552 aagatggcttatgaaaactgattatagcttatgtgaaaacaatttaact-ttattatcttgttatggaaacaacttatacataagcatttat 50298462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 4471244 - 4471179
Alignment:
Q  80 aacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    ||||||||||| |||||||||   | || |||||||||||||||||| |  |||||||||||||||    
T  4471244 aacttatgacatatccataagttgtattcaacttattttcagaagcttttcaagatagcttatgaa 4471179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 11264399 - 11264290
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||| |||||| ||| |||  |||||||||||  ||||||| |  |||| ||||||||| || |||||||||| ||| ||||||||| ||  ||||||     
T  11264399 gtttgggagagcatatagaatcaacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataa 11264300  T
Q  158 cttatatgaa 167  Q
    | ||||||||    
T  11264299 catatatgaa 11264290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 54261087 - 54261128
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    ||||||||||||||||| ||||| || |||||||||||||||    
T  54261087 tttttaacttattttcataagctttcaaagatagcttatgaa 54261128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 1966031 - 1965955
Alignment:
Q  66 gagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttat 142  Q
    ||||||||| ||  |||||||||||  | |||||||  |||||||||||||| |||||| | |||| ||||||||||    
T  1966031 gagcttatgaaaacaacttatgacatgttcataagctgtttttaacttatttccagaagatttctaggatagcttat 1965955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 6987713 - 6987793
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagc 138  Q
    ||||| |||||||||||||   |||||||||||  ||||||| | ||||| ||||||||| || |||||||| | ||||||    
T  6987713 gtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatagc 6987793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 11158382 - 11158438
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaa 167  Q
    ||||||| || |||||||||||||||||||||||| ||  |||||| ||| ||||||    
T  11158382 cttatttccacaagctctctaagatagcttatgaaaacaacttataacttgtatgaa 11158438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 17822874 - 17822942
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    |||||||  |||||| |||||||||| ||| |||| ||||||||||||||| ||  |||||||| ||||    
T  17822874 cataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttatagcatata 17822942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 29778840 - 29778780
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| |||||||  ||| ||||||||||| ||  |||| ||||||||||||||||    
T  29778840 cttattttcataagctcttcaaggtagcttatgaaaacaacttacagcttatatgaaaaca 29778780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 47119010 - 47119050
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||| |||||||||  |||||||||||||||||||||    
T  47119010 aagatagcatatgaatacaacttatagcttatatgaaaaca 47119050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 52259691 - 52259631
Alignment:
Q  96 ataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttata 156  Q
    |||||| ||||| |||||||||||| ||||||||  ||||||||||| || || |||||||    
T  52259691 ataagctattttcaacttattttcataagctctcccagatagcttataaaaacagcttata 52259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 281820 - 281933
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||| ||||||| ||||||| |||||||||||  || |||||   |||| | ||||||| ||  ||||||||| ||||||||||||| || ||||||||    
T  281820 gtttgggagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatag 281919  T
Q  158 cttatatgaaaaca 171  Q
    ||||||||||||||    
T  281920 cttatatgaaaaca 281933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 2455901 - 2455821
Alignment:
Q  65 agagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||||||||||||  |||||||||||   |||||| | ||||| ||||||||| || |||||||| |||||||||||||||    
T  2455901 agagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctctccaagatagcttatgaa 2455821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 4246507 - 4246395
Alignment:
Q  59 tttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagc 158  Q
    |||||| |||||| |||||  |||| ||||||  |||||||||  |||| |||||||||| | | |||||| |  |||||||||||| || ||||||||     
T  4246507 tttgagtgagcttttggaaacaactcatgacatgtccataagctgttttcaacttatttttatatgctctccataatagcttatgaaaacagcttataga 4246408  T
Q  159 ttatatgaaaaca 171  Q
    |||||||||||||    
T  4246407 ttatatgaaaaca 4246395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 9027696 - 9027606
Alignment:
Q  38 acataatcacgtgcgagtccgtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctct 128  Q
    |||||| ||||||| |||| |||||| |||||||||||||  |||||||||||  ||||||||   |||| | |||||||||| |||||||    
T  9027696 acataagcacgtgcaagtctgtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 6647439 - 6647398
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  6647439 ttttcaacttattttcataagctctctaagatagcttatgaa 6647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 7148757 - 7148657
Alignment:
Q  65 agagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatat 164  Q
    |||||||| ||||  ||||||||||   ||||||||| ||||| |||||||||||| |||||||| | | |||||||| || |   ||||||||||||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttattaaaataccttatagcttatat 7148658  T
Q  165 g 165  Q
    |    
T  7148657 g 7148657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 9093581 - 9093641
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||  ||| ||||||||| |||||||||| || |||||||||||||| |||||||    
T  9093581 cttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaaca 9093641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 31671099 - 31671159
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| ||||| |||| ||||| ||| ||| || ||||||||||||||||||||||    
T  31671099 cttattttcataagctatctaggatagtttacgaaaacagcttatagcttatatgaaaaca 31671159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 7446357 - 7446416
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||| |||| | || |||||||||||||| || |||||| |||||||||||||||    
T  7446357 ttattttcataagccccctgagatagcttatgaaaacagcttatggcttatatgaaaaca 7446416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 25100121 - 25100028
Alignment:
Q  78 gaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||||||  | |||  || ||||| |||||||||  | ||||||| |||||||||||||||| ||  |||||| ||| ||||||||||    
T  25100121 gaaacttatgacatgttcatttgctattttcaacttatttctataagctctttaagatagcttatgaaaacaacttataacttctatgaaaaca 25100028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 32171334 - 32171423
Alignment:
Q  37 gacataatcacgtgcgagtccgtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagct 126  Q
    ||||||| ||| |||||| | ||||||||||||||||| ||  | |||||||||| |||| |||| ||||| | ||||||| || |||||    
T  32171334 gacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagct 32171423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 1275194 - 1275134
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| || |||||||| | |||| | |||||| || ||||||||||||||||||||||    
T  1275194 cttatttccataagctctccaggataacatatgaaaacagcttatagcttatatgaaaaca 1275134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 1498026 - 1497966
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| |||||||| ||||||| ||||||| ||  |||||| || |||||||||||    
T  1498026 cttattttcataagctctccaagatagtttatgaaaacttcttataactcatatgaaaaca 1497966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 28088259 - 28088307
Alignment:
Q  123 agctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| | ||||||||||||| || | ||||||||||||||||||||    
T  28088259 agctctccatgatagcttatgaaaacagtttatagcttatatgaaaaca 28088307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 31812038 - 31812090
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    |||||||||| |||||||| ||||||||||||||| ||  |||||| ||||||    
T  31812038 cttattttcataagctctccaagatagcttatgaaaacaacttatatcttata 31812090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 32172751 - 32172638
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||| ||||||||||||||  |||||||||||  ||||||||||||||| | ||||||| ||  || |||  | ||||||||||||| || ||||||||    
T  32172751 gtttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatag 32172652  T
Q  158 cttatatgaaaaca 171  Q
    |||||||| |||||    
T  32172651 cttatatgtaaaca 32172638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 39105525 - 39105449
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| ||||||| |||||||||| ||| |||| ||||||||||||||| || | |||||||||||| |||||||    
T  39105525 cataagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatagcttatacgaaaaca 39105449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 36542256 - 36542367
Alignment:
Q  60 ttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagct 159  Q
    ||||||||  ||||||||  | |||||||||  |||| ||||  |||||||||||||| || |||||||||| ||||||||||| |  | ||||||||||    
T  36542256 ttgagagattttatggaaacatcttatgacatgtccagaagctgtttttaacttatttccacaagctctctaggatagcttatggaatcagcttatagct 36542355  T
Q  160 tatatgaaaaca 171  Q
    ||||||| ||||    
T  36542356 tatatgagaaca 36542367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 12975381 - 12975332
Alignment:
Q  122 aagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  12975381 aagctctccaagatagcttatgaacacagcttatagcttatatgaaaaca 12975332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 2568732 - 2568645
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||||||| || ||||||  ||||||| ||||||||||  ||||||| | ||||||||||||| ||  ||||||||||||| |||||    
T  2568732 cttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttatacgaaaa 2568645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 12425623 - 12425556
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||| |||||||||||| ||| |||| |||||||||| |||| || |||||||||||||| |||||||    
T  12425623 ttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaaca 12425556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 13604825 - 13604934
Alignment:
Q  62 gagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagctta 161  Q
    ||||||||||||| ||  | |||||||||  |||||| |   |||| |||||||||||| |||||||  |||||| |||||||| || ||||| || |||    
T  13604825 gagagagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataacttatgaaaacagcttaaagttta 13604924  T
Q  162 tatgaaaaca 171  Q
    ||||||||||    
T  13604925 tatgaaaaca 13604934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 28777046 - 28776978
Alignment:
Q  103 atttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| ||||||||||  || |||| ||||||||||||||| || ||||||||| |||| |||||||    
T  28777046 atttttatcttattttcattagttctccaagatagcttatgaaaacagcttatagcctatacgaaaaca 28776978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 6183489 - 6183426
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaacactt 174  Q
    ||||||| || |||||||| || | ||||||||||||| |||||||||||| ||||||| ||||    
T  6183489 cttatttccataagctctccaaaacagcttatgaatacagcttatagcttacatgaaaatactt 6183426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 15003540 - 15003595
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaa 167  Q
    |||||| || |||||||||  ||||||||||||| ||| |||||||||||||||||    
T  15003540 ttatttccataagctctcttggatagcttatgaaaaccacttatagcttatatgaa 15003595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 34736415 - 34736333
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagct--tatgaataccgcttatagcttat 162  Q
    ||||||||||| |||||  |||||||||  ||||||||| |||||| ||||||||| |  |||||| || |||||||||||||    
T  34736415 cttatgacaaacccatataccatttttactttattttcataagctcgctaagatagtttatatgaaaacagcttatagcttat 34736333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 41957430 - 41957536
Alignment:
Q  65 agagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatat 164  Q
    |||||||| ||||  | |||||||||  ||||||||   |||| | |||||||||| ||| |||| | ||||||||||||| || ||||||| |||| ||    
T  41957430 agagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacat 41957529  T
Q  165 gaaaaca 171  Q
    |||||||    
T  41957530 gaaaaca 41957536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 14295540 - 14295491
Alignment:
Q  122 aagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||| | ||||||||| ||| || ||||||||||||||||||||||    
T  14295540 aagctctccaggatagcttacgaaaacagcttatagcttatatgaaaaca 14295491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 21768193 - 21768282
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||  |||||| ||  |||| |||||||||||  |||||||  |||||| |||||||| || ||||| || |||||||||||||    
T  21768193 cttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatgaaaacagcttaaagtttatatgaaaaca 21768282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 28586738 - 28586851
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||| ||||||||||||||  | ||||||||| |||| |||||  |||| | |||||||  | |||||||||| |||||||  | || || |||||||     
T  28586738 gtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctctaggatagctcgtcaaaacagcttataa 28586837  T
Q  158 cttatatgaaaaca 171  Q
     |||||||||||||    
T  28586838 tttatatgaaaaca 28586851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 40048386 - 40048419
Alignment:
Q  189 ttgttatagaaacaatttatacataagcacttat 222  Q
    ||||||||||||||| ||||||||||||||||||    
T  40048386 ttgttatagaaacaacttatacataagcacttat 40048419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 41016607 - 41016570
Alignment:
Q  126 tctctaagatagcttatgaataccgcttatagcttata 163  Q
    |||||||||||||||||||| || ||||||||||||||    
T  41016607 tctctaagatagcttatgaaaacggcttatagcttata 41016570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 2569668 - 2569780
Alignment:
Q  59 tttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagc 158  Q
    |||||||  ||||||||||  | |||||||||  |||||||||  |||| |  |||| |||| ||||| | || ||||| ||||||| || ||||||||     
T  2569668 tttgagattgcttatggaaatagcttatgacatgtccataagctgttttaagtttatattcataagctttttatgatagtttatgaaaacagcttataga 2569767  T
Q  159 ttatatgaaaaca 171  Q
    |||||||||||||    
T  2569768 ttatatgaaaaca 2569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 6593344 - 6593292
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    |||||||||| |||||||||||| |||||||| || || ||||||||| ||||    
T  6593344 cttattttcataagctctctaaggtagcttatcaaaacagcttatagcctata 6593292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 7319451 - 7319391
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||| | ||| |||| ||||||||||| ||| || | ||||||||||||||||||||    
T  7319451 cttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatgaaaaca 7319391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 9202773 - 9202833
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| ||| |||  |||||| |||||||| || |||||| |||||||||||||||    
T  9202773 cttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaaca 9202833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 10272456 - 10272516
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| || ||||| ||||| ||||||||| ||  ||||||||||||| |||||||    
T  10272456 cttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaaca 10272516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 31875567 - 31875646
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatag 137  Q
    |||||||| |||||||||||  |||||||||||  ||||||||||||||| |||||||||||| |||||||  |||||||    
T  31875567 gtttgagaaagcttatggaaacaacttatgacatgtccataagccattttcaacttattttcataagctcttgaagatag 31875646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 26473730 - 26473811
Alignment:
Q  64 gagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    ||||||||||| ||  | |||||||||  || |||||| | |||||||||||||||| |||||||||| |||||||||||||    
T  26473730 gagagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaa 26473811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 31862590 - 31862486
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||||||||| ||| ||||| ||||||||||  || |||||||  |||| | |||||||||| |||||||||| |||| |||||||| ||  |||||||    
T  31862590 gtttgagagag-ttacggaagcaacttatgacctatgcataagctgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatag 31862492  T
Q  158 cttata 163  Q
    ||||||    
T  31862491 cttata 31862486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 8062569 - 8062509
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| || ||||||||||||||||||||  ||  |||||||||||||||||||||    
T  8062569 cttattttcataaactctctaagatagcttatgagaacatcttatagcttatatgaaaaca 8062509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 27028892 - 27028824
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    ||||||| ||||| | |||||||||| |||||||| ||||||||||||||| || ||||||||| ||||    
T  27028892 cataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatata 27028824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 38874709 - 38874633
Alignment:
Q  93 tccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||||||| ||||||| |||||||||| | | |||| || |||||||||||| || ||||| ||||||||||||||    
T  38874709 tccataagctatttttagcttattttcatatgttctccaaaatagcttatgaaaacagcttagagcttatatgaaaa 38874633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 5069795 - 5069697
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttata 156  Q
    ||||||||||||||||||||  | ||||| |||  | |||||| |||||| | |||||||||| ||||| || |||||| |||||||| || |||||||    
T  5069795 gtttgagagagcttatggaaacatcttataacatgttcataagtcattttcagcttattttcataagctttcgaagatatcttatgaaaacagcttata 5069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 18931270 - 18931376
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    |||| |||||||||||||||||||||||||| | ||  ||| ||  ||||  ||||||||  | ||| |||||| ||||||||||||| || ||||| ||    
T  18931270 gtttaagagagcttatggaagaaacttatgatatatttataggctgttttcgacttatttcaacaagttctctaggatagcttatgaaaacagcttacag 18931369  T
Q  158 cttatat 164  Q
    |||||||    
T  18931370 cttatat 18931376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 39551193 - 39551290
Alignment:
Q  70 ttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaa 167  Q
    ||||||||  |||||||||||  |||| ||||  ||||||||||||||| | |||||||| | || |||||||||| ||  |||||||||| ||||||    
T  39551193 ttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaacaacttatagcttgtatgaa 39551290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 8062374 - 8062322
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    ||||||| || || ||||||||||||||||||||| || ||||||||||||||    
T  8062374 cttatttccataatctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 10075570 - 10075634
Alignment:
Q  105 ttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||| |||||||||| |||||||||| ||||||||||||| |  ||||||| ||||||| ||||    
T  10075570 ttttagcttattttcataagctctctaggatagcttatgaaaatagcttataacttatataaaaa 10075634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 30987957 - 30988013
Alignment:
Q  52 gagtccgtttgagagagcttatggaagaaacttatgacaaatccataagccattttt 108  Q
    ||||| ||||||||||||||||||||  |||||||||||  ||||||||| ||||||    
T  30987957 gagtctgtttgagagagcttatggaaacaacttatgacatgtccataagctattttt 30988013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 11415252 - 11415141
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    |||| |||||| ||||||||  | ||||| |||  ||||||||| ||| | | |||||||||| || ||||||| ||||||||||||| || || ||||     
T  11415252 gttttagagagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataa 11415153  T
Q  158 cttatatgaaaa 169  Q
    ||||||| ||||    
T  11415152 cttatataaaaa 11415141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 27646004 - 27645929
Alignment:
Q  56 ccgtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctcta 131  Q
    ||||||||||||||||||| |   ||||||||||| ||| |||||| ||||| |||||||||  | ||||||||||    
T  27646004 ccgtttgagagagcttatgcatacaacttatgacatatctataagctattttcaacttatttctataagctctcta 27645929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 1433601 - 1433543
Alignment:
Q  103 atttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagctta 161  Q
    ||||| |||||||||||| |||||||| | ||||||||||||| || ||||| ||||||    
T  1433601 attttcaacttattttcataagctctccaggatagcttatgaaaactgcttaaagctta 1433543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 6509275 - 6509381
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    |||||||||||||||| |||  | |||||||||   | |||| | ||||| | |||||||  | |||||||| | ||||||||||||| || ||||||||    
T  6509275 gtttgagagagcttatagaaacagcttatgacatgcctataaactattttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatag 6509374  T
Q  158 cttatat 164  Q
    |||||||    
T  6509375 cttatat 6509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 4558842 - 4558785
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    |||||| || |||||||||| ||||||||||| | || ||||||||| ||||||||||    
T  4558842 ttatttccataagctctctaggatagcttatggaaacagcttatagcatatatgaaaa 4558785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 11188261 - 11188294
Alignment:
Q  189 ttgttatagaaacaatttatacataagcacttat 222  Q
    ||||||||||||||| ||||||||||||||||||    
T  11188261 ttgttatagaaacaacttatacataagcacttat 11188294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 12361266 - 12361177
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||  |||||||||  |||| ||||||||| ||  |||||||    ||| |||||||| || ||||||||||||||||||||||    
T  12361266 cttatgacatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagcttatatgaaaaca 12361177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 21653157 - 21653092
Alignment:
Q  80 aacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||||||||||  | ||||||| ||||| | |||||||||| |||||||| ||||||||| |||||    
T  21653157 aacttatgacacgttcataagctattttcagcttattttcataagctctccaagatagctaatgaa 21653092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 26813911 - 26813944
Alignment:
Q  189 ttgttatagaaacaatttatacataagcacttat 222  Q
    |||||||||||| |||||||||||||||||||||    
T  26813911 ttgttatagaaataatttatacataagcacttat 26813944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 8823374 - 8823418
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagct 126  Q
    ||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  8823374 cttatgacatatccataagccgttttcaacttatttccagaagct 8823418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 9834834 - 9834874
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||||||||| ||  |||||||||||||||||||||    
T  9834834 aagatagcttatgaaaacaacttatagcttatatgaaaaca 9834874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 40859902 - 40859858
Alignment:
Q  242 agggcctgtttggatttgcaacttatagcacaagcgcttatcatg 286  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||||    
T  40859902 agggcctgtttggataagcagcttatagcacaagtgcttatcatg 40859858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 4622167 - 4622080
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    |||||||||  |||||||||  |||||| |||||||||| |||||||| |||||||| |||| | || ||||||||||||||||||||    
T  4622167 cttatgacatgtccataagctgtttttagcttattttcacaagctctccaagatagcatatggaaacagcttatagcttatatgaaaa 4622080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 28482229 - 28482315
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaa 168  Q
    ||||||| | || ||||| | ||||||| |||||||||  |||||||| |||||| ||||| || || |||||||||||||||||||    
T  28482229 cttatgatatattcataaactatttttagcttattttcgtaagctctccaagataacttataaaaacagcttatagcttatatgaaa 28482315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 39270432 - 39270506
Alignment:
Q  93 tccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaa 167  Q
    |||||||||  |||| |||||||||||| | |||||||| | ||||||||||| || ||||||| ||||||||||    
T  39270432 tccataagctgttttcaacttattttcatatgctctctatggtagcttatgaaaacagcttatatcttatatgaa 39270506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 7136994 - 7137075
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    ||||||||| || ||||||  ||||| | |||||||||| ||| |||| ||||||||||||||| || |||||||| |||||    
T  7136994 cttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattata 7137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 31294515 - 31294572
Alignment:
Q  80 aacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatag 137  Q
    ||||||||||| ||||||||||  |||| |||||||||||| |||||||||| |||||    
T  31294515 aacttatgacacatccataagctcttttcaacttattttcataagctctctatgatag 31294572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 31517765 - 31517822
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaa 168  Q
    |||||||||| |||||||| |||| || ||||||| || |||||||||||||||||||    
T  31517765 cttattttcataagctctccaagacagattatgaagacagcttatagcttatatgaaa 31517822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 25479626 - 25479570
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaa 167  Q
    |||||||||| |||||||||| ||||||||||||| ||  |||||||| ||||||||    
T  25479626 cttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaa 25479570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 44422744 - 44422684
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| |||||||| | |||||||||| || |  ||||||||||||||||||||||    
T  44422744 cttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaaca 44422684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 49888812 - 49888752
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| ||| |||||||||||||||||||| ||  || |||||||||| |||||||    
T  49888812 cttattttcataagttctctaagatagcttatgaaaacaactaatagcttatacgaaaaca 49888752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 4548773 - 4548722
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttat 155  Q
    |||||| ||||||||| ||||||||| ||||||||||||||| || ||||||    
T  4548773 tttttagcttattttctgaagctctccaagatagcttatgaaaacagcttat 4548722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 7218092 - 7218159
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||| |||||||||||| ||| |||| | ||||| ||||||| ||  |||||||||||||||||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaaca 7218159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 23902103 - 23902150
Alignment:
Q  122 aagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||||||||||||||||| |||| ||  |||||||||||||||||||    
T  23902103 aagctctctaagatagcttttgaaaacaacttatagcttatatgaaaa 23902150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 29793834 - 29793767
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||| |||||| ||||| |||||||| |||||||||||||||  |  ||||||||||||| |||||||    
T  29793834 ttttcaacttagtttcataagctctcgaagatagcttatgaactcaacttatagcttatacgaaaaca 29793767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 52190227 - 52190140
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    ||||||| |||||||| |||  | |||||||||| |||| ||||| |||| | |||||||||  |||||||| | |||||||||||||    
T  52190227 gtttgagtgagcttatagaaatatcttatgacaagtccacaagccgttttcagcttattttcgtaagctctccatgatagcttatgaa 52190140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 3234203 - 3234173
Alignment:
Q  256 tttgcaacttatagcacaagcgcttatcatg 286  Q
    |||||||||||||||||||||||||||||||    
T  3234203 tttgcaacttatagcacaagcgcttatcatg 3234173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 37241847 - 37241905
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    |||||||||| |||||||||| |||| |||||||| ||  ||| |||||||||||||||    
T  37241847 cttattttcataagctctctaggatatcttatgaaaacaacttctagcttatatgaaaa 37241905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 38867803 - 38867909
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||||||||||||||||||  ||||||||| |  ||||| ||   |||||| |||||||||| ||| |||  |||||| |||||||| || | ||| ||    
T  38867803 gtttgagagagcttatggaaataacttatgatatgtccatcagttgtttttagcttattttcataagttcttcaagataacttatgaaaacagtttaaag 38867902  T
Q  158 cttatat 164  Q
    |||||||    
T  38867903 cttatat 38867909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 5421956 - 5422005
Alignment:
Q  122 aagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||||||||||||||| || ||  ||||||||||||| |||||||    
T  5421956 aagctctctaagatagcttatcaaaacaacttatagcttataagaaaaca 5422005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 5591938 - 5592051
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||||||||||||||| ||  | |||||||||  | |||||||| |||| || |||||| || ||| | ||||||||| |||||||| ||   ||||||    
T  5591938 gtttgagagagcttatgaaaacagcttatgacacgtgcataagccgttttcaatttatttccataagttatctaagatatcttatgaaaacgtattatag 5592037  T
Q  158 cttatatgaaaaca 171  Q
     ||| |||||||||    
T  5592038 tttacatgaaaaca 5592051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 19389953 - 19389912
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||||| |||||||||| |||||||| |||||||||||||||    
T  19389953 tttttagcttattttcacaagctctccaagatagcttatgaa 19389912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 25005833 - 25005882
Alignment:
Q  122 aagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||| | ||||||||||||| ||  |||||||||||||||||||||    
T  25005833 aagctctccaggatagcttatgaaaacaacttatagcttatatgaaaaca 25005882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 25006074 - 25006119
Alignment:
Q  126 tctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||||    
T  25006074 tctccaagatagcttatgaaaacaacttatagcttatatgaaaaca 25006119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 34290310 - 34290229
Alignment:
Q  82 cttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    ||||||||| || ||||||   |||| | |||||||||| ||| |||  ||||||||||||||| || ||||||||||||||    
T  34290310 cttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttata 34290229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 7472356 - 7472304
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    |||||||||| |||||||| ||||||||||||| | || |||||||| |||||    
T  7472356 cttattttcataagctctccaagatagcttatggaaacagcttatagattata 7472304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 9656673 - 9656637
Alignment:
Q  133 gatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    ||||||||||||| || ||||||||||||||||||||    
T  9656673 gatagcttatgaacacagcttatagcttatatgaaaa 9656637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 12564919 - 12564959
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||||||||| ||  |||||||||||||||||||||    
T  12564919 aagatagcttatgaaaacaacttatagcttatatgaaaaca 12564959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 24915060 - 24915128
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    |||||||  |||| |||||||||||| ||| |||| |||| |||||||||| || ||||||||| ||||    
T  24915060 cataagcttttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatata 24915128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 21453385 - 21453279
Alignment:
Q  65 agagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatat 164  Q
    ||||||||| ||| || |||||||||  ||||||| ||||||| | ||||| ||||  ||||||||| ||||||||||||| || | |||||||||||||    
T  21453385 agagcttatagaataatcttatgacatctccataaaccattttcagcttatcttcattagctctctaggatagcttatgaaaacagtttatagcttatat 21453286  T
Q  165 gaaaaca 171  Q
    || ||||    
T  21453285 gagaaca 21453279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 38010775 - 38010699
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||  |||||| ||||||| || ||| |||||| ||||| ||||||| || ||||||||||||||||||||||    
T  38010775 cataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaaca 38010699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 30456476 - 30456535
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||| |||||||| ||||||| ||||||| ||| |||||| ||||||||||||||    
T  30456476 ttattttcataagctctccaagatagtttatgaaaaccacttataacttatatgaaaaca 30456535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 47177687 - 47177621
Alignment:
Q  105 ttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||| |||||||||| ||  |||| |||||||||| |||| || ||||||||||||||||||||||    
T  47177687 ttttagcttattttcataaattctccaagatagcttttgaaaacagcttatagcttatatgaaaaca 47177621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 529451 - 529386
Alignment:
Q  80 aacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||||||||||| | |||||||  |||| ||| |||||||| |||||||| |||||||||||||||    
T  529451 aacttatgacaagttcataagctgttttcaacatattttcataagctctccaagatagcttatgaa 529386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 28340880 - 28340929
Alignment:
Q  122 aagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| ||||||||||||| || ||||||||||||||||| ||||    
T  28340880 aagctctctaggatagcttatgaaaacagcttatagcttatatgacaaca 28340929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 28165152 - 28165023
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaacacttt---ttctatttttaacttg 191  Q
    |||||||  |||| ||||||||| || |||||||| | |||||||||| || || | ||||||||||||| |||||| |||   |||  ||| |   |||    
T  28165152 cataagctgttttcaacttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaacaatttgacttcattttatcttttg 28165053  T
Q  192 ttatagaaacaatttatacataagcactta 221  Q
    ||||||||| || |||||||||||||||||    
T  28165052 ttatagaaagaacttatacataagcactta 28165023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 36370760 - 36370625
Alignment:
Q  65 agagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatat 164  Q
    |||||||||| || ||||||  ||||  ||||||| | |||||||| |||||| || |||||||  | ||||| ||||| | ||  |||||||||||| |    
T  36370760 agagcttatgaaaaaaacttgggacatgtccataaacgatttttaatttatttccataagctcttcaggatagtttatggaaacaacttatagcttatgt 36370661  T
Q  165 gaaaacactttttctatttttaacttgttatagaaa 200  Q
    ||||||| |||  ||  ||||| |||||||||||||    
T  36370660 gaaaacagtttaacttattttatcttgttatagaaa 36370625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 40689011 - 40689069
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaa 169  Q
    |||||||||| ||| | || | ||||||||||||| || ||||||||||||||||||||    
T  40689011 cttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaa 40689069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 25596085 - 25596044
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  25596085 ttttcaacttattttcataagctctccaagatagcttatgaa 25596044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 30812193 - 30812128
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaacactttt 176  Q
    ||||||| || |||||||| | ||||||| ||||| || |||||||||||||| ||||||| ||||    
T  30812193 cttatttccataagctctccatgatagctaatgaaaacagcttatagcttatacgaaaacaatttt 30812128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 27548288 - 27548248
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  27548288 aagatagcttatgaaaacagcttatagcttaaatgaaaaca 27548248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 33645937 - 33646044
Alignment:
Q  62 gagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagctt- 160  Q
    ||||||||||||||||  |||||||||||  || |||||   ||||||  |||||| || ||||||||  |||||||||||||| || | |||||||||     
T  33645937 gagagagcttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctctc-cagatagcttatgaaaacagtttatagctta 33646035  T
Q  161 atatgaaaa 169  Q
    |||||||||    
T  33646036 atatgaaaa 33646044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 33678832 - 33678776
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagctt 160  Q
    |||| |||||||||||| ||| | || ||||||||||||||| || |||||||||||    
T  33678832 ttttcaacttattttcacaagttttccaagatagcttatgaaaacagcttatagctt 33678776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 46825151 - 46825083
Alignment:
Q  104 tttttaacttattt-tcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||| ||||||| ||| |||| ||| ||||||||||||||| || | |||| |||||||||||||||    
T  46825151 tttttagcttatttctcataagcactccaagatagcttatgaaaacggtttatggcttatatgaaaaca 46825083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 25182959 - 25183071
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccattttt-aacttattttcagaagctctctaagatagcttatgaataccgcttata 156  Q
    ||||||||||||||||| ||  ||||||||||| |||||||||| |||||| | | ||||| || ||  | || | ||||||||||||| || |||||||    
T  25182959 gtttgagagagcttatgaaaacaacttatgacatatccataagctatttttcagcatatttccacaaattttccatgatagcttatgaaaacagcttata 25183058  T
Q  157 gcttatatgaaaa 169  Q
    ||| |||||||||    
T  25183059 gctcatatgaaaa 25183071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 52619064 - 52618988
Alignment:
Q  95 cataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||| ||||| | |||||||||| |||||||  |||||||||| |||| || ||||||| ||||||||||||||    
T  52619064 cataagctattttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaaca 52618988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 20669663 - 20669604
Alignment:
Q  112 ttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    |||||||||| ||||||||||||||| ||||||| ||   ||||||||||||||||||||    
T  20669663 ttattttcaggagctctctaagatagtttatgaaaacgaattatagcttatatgaaaaca 20669604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 37273232 - 37273145
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaa 145  Q
    ||||| ||||||||||||||  |||||||||||  ||||||||   |||| ||||||||| || ||| |||| |||||||||||||||    
T  37273232 gtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaa 37273145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 24280805 - 24280707
Alignment:
Q  58 gtttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatag 157  Q
    ||||||| ||||||||| ||| ||||||||| |  |||||||    |||| |||||||||||| |||||||| | ||||||||||||  || ||||||||    
T  24280805 gtttgagggagcttatgaaagcaacttatgatatctccataa----ttttcaacttattttcataagctctccatgatagcttatgacaacagcttatag 24280710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 33405212 - 33405252
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  33405212 aagatagcttatgaaaacagcttatagcttatatgaaaaca 33405252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 39602228 - 39602287
Alignment:
Q  104 tttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    |||| |||||||||||| ||| |||| ||||||||||||||| || ||||||| ||||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataacttata 39602287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 34924563 - 34924597
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaa 145  Q
    |||||||||| ||||||||||||||||||||||||    
T  34924563 cttattttcataagctctctaagatagcttatgaa 34924597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 11253535 - 11253491
Alignment:
Q  122 aagctctctaagatagcttatgaataccgcttatagcttatatgaa 167  Q
    |||||||||| ||||||||||||| || ||||||||||||||||||    
T  11253535 aagctctctaggatagcttatgaa-acagcttatagcttatatgaa 11253491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 20502093 - 20502158
Alignment:
Q  111 cttattttcagaagctctctaagatagcttatgaataccgcttatagcttatatgaaaacactttt 176  Q
    |||||| ||| |||||||  | ||||||||||||| || ||||||||| |||||||||||| ||||    
T  20502093 cttattctcataagctcttcaggatagcttatgaaaacagcttatagcgtatatgaaaacagtttt 20502158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 26878077 - 26878048
Alignment:
Q  193 tatagaaacaatttatacataagcacttat 222  Q
    ||||||||||||||||||||||||||||||    
T  26878077 tatagaaacaatttatacataagcacttat 26878048  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 47319295 - 47319348
Alignment:
Q  110 acttattttcagaagctctctaagatagcttatgaataccgcttatagcttata 163  Q
    ||||||||||| |||||||||||||||| ||||||  || |||||||| |||||    
T  47319295 acttattttcataagctctctaagatagattatgacaacagcttatagtttata 47319348  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 2201153 - 2201113
Alignment:
Q  131 aagatagcttatgaataccgcttatagcttatatgaaaaca 171  Q
    ||||||||| ||||| || ||||||||||||||||||||||    
T  2201153 aagatagctaatgaaaacagcttatagcttatatgaaaaca 2201113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 36646355 - 36646467
Alignment:
Q  59 tttgagagagcttatggaagaaacttatgacaaatccataagccatttttaacttattttcagaagctctctaagatagcttatgaataccgcttatagc 158  Q
    |||| ||||||||||||||   ||||||| ||  |||||||||  |||| | |||||||  | || ||||||| ||||||||||||| ||   ||||| |    
T  36646355 tttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataac 36646454  T
Q  159 ttatatgaaaaca 171  Q
    |||||||||||||    
T  36646455 ttatatgaaaaca 36646467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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