View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_8 (Length: 499)
Name: NF2057_low_8
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 46261439 - 46261918
Alignment:
| Q |
1 |
gttataacaattgcttgggcatggttagcagctgcagctgcttgtaaaagttgaatagaaccatctcctcctacatcaaaatcattatcgatctcgcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46261439 |
gttataacaattgcttgggcatggttagcagctgcagctgcttgtaaaagttgaatagaaccatctcctcctacatcaaaatcattatcgatctcgcact |
46261538 |
T |
|
| Q |
101 |
ctccagctagaaggggacggagaagtaatggtgccatgcaagctgccacagctgaagaactcattctgtttacagctttgtgtgaagccacagtttgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46261539 |
ctccagctagaaggggacggagaagtaatggtgccatgcaagctgccacagctgaagaactcattctgtttacagctttgtgtgaagccacagtttgcat |
46261638 |
T |
|
| Q |
201 |
catcaacagtattctgcacaagaacgagatcgttaatatagactgccnnnnnnncatgatttgagtaatgtcaaggcatcatatcgtgcaaaagagcccg |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
46261639 |
catcaacagtattctgcacaagaacgagatcgttaatatagactgccaaaaaaacatgatttgagtaatgtcaaggcatcct-----gcaaaagagcccg |
46261733 |
T |
|
| Q |
301 |
tgcatttaggtaaacaacttaatccagcgcttattaattaactgtttatcgtacaagagcttatgtataagctatttctacaatcaaagaggttggttaa |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46261734 |
tgcatttaggtaaacaacttaatcaagcgcttattaattaactgtttatcgtacaagagcttatgtataagctatttctacaatcaaagaggttggttaa |
46261833 |
T |
|
| Q |
401 |
acggttttcacataagctgtaagttgttttaaatgctatcctcatgggggaagcatattgaaatatgctgaaaataacttatggg |
485 |
Q |
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| T |
46261834 |
acggttttcacataaactgtaagttgttttaaatgctatcctcatgggggaggcatattgaaatatgctgaaaataacttatggg |
46261918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 27780712 - 27780495
Alignment:
| Q |
4 |
ataacaattgcttgggcatggttagcagctgcagctgcttgtaaaagttgaatagaaccatctcctcctacatcaaaatcattatcgatctcgcactctc |
103 |
Q |
| |
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||||||||| |||| ||||||||||| || ||||||||||||| |||||||| |||| ||| || ||||||||||||||||| || ||||| || || | |
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| T |
27780712 |
ataacaattccttgagcatggttagccgcagcagctgcttgtagaagttgaagggaactatccccacctacatcaaaatcattttctatctcacaatccc |
27780613 |
T |
|
| Q |
104 |
cagctagaaggggacggagaagtaatggtgccatgcaagctgccacagctgaagaactcattctgtttacagctttgtgtgaagccacagtttgcatcat |
203 |
Q |
| |
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|| |||||||||| || |||||||||||||||||||| ||||||||||| || || ||||||||||| || |||| | ||||| || | ||||||||| |
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| T |
27780612 |
caactagaagggggcgaagaagtaatggtgccatgcatgctgccacagccgatgagctcattctgttctcatcttttcgggaagctactgcttgcatcat |
27780513 |
T |
|
| Q |
204 |
caacagtattctgcacaa |
221 |
Q |
| |
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||| ||||||||| |||| |
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|
| T |
27780512 |
caagagtattctgtacaa |
27780495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 383
Target Start/End: Original strand, 32172577 - 32172614
Alignment:
| Q |
346 |
ttatcgtacaagagcttatgtataagctatttctacaa |
383 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
32172577 |
ttatcatacaagagcttatgtataaactatttctacaa |
32172614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 42550154 - 42550209
Alignment:
| Q |
335 |
taattaactgtttatcgtacaagagcttatgtataagctatttctacaatcaaaga |
390 |
Q |
| |
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||||||| |||||||| |||||| |||||||||||||||| |||||| || ||||| |
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| T |
42550154 |
taattaagtgtttatcatacaagtgcttatgtataagctagttctacgataaaaga |
42550209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 25278191 - 25278154
Alignment:
| Q |
355 |
aagagcttatgtataagctatttctacaatcaaagagg |
392 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||| |
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| T |
25278191 |
aagagcttatgtgtaaactatttctacaatcaaagagg |
25278154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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