View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_low_9 (Length: 477)
Name: NF2057_low_9
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_low_9 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: scaffold0643 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 8232 - 7788
Alignment:
| Q |
17 |
cagcagctataggagataagctagtgagcaaacagcccctccttgtatcaacgaaggaaggggacaccataggtgaagaaaagaaaacaagcagtaccac |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8232 |
cagcagctataggagataagctagcgagcaaacagcccctccttgtatcagcgaaagaaggggacaccacaggtgaagaaaagaaaacaagcagtaccac |
8133 |
T |
|
| Q |
117 |
atagcaccttagcaactaggacaaaccgcacaaacagcacagtccacgacagagataacaaaaaccaccagaaaaatcaaattccccatctctggctctt |
216 |
Q |
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| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8132 |
agagcgccttagcaactaggacaaaccgcacaaacaacacagtccacgacagagataacaaaaaccaccagaaaaatcaaattccccatctctggctctt |
8033 |
T |
|
| Q |
217 |
ctttccttatctacaaaaacagctaattggattccaccgccactcatagtacaagcacgccggaatacgataaacaacttatttccaacttatagcacaa |
316 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8032 |
ctttcctcatctacaaagacaactaattggattccaccgccactcatagtacaagtacgccggaatacgataaacaacttatttccaacttatagcacaa |
7933 |
T |
|
| Q |
317 |
agcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaaatttttat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7932 |
agcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaaaattttat |
7833 |
T |
|
| Q |
417 |
gaaaaatgtcataagttctcccttacaatctcacaaagtttatgt |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832 |
gaaaaatgtcataagttctcccttacaatctcacaaagtttatgt |
7788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 131 - 461
Target Start/End: Original strand, 30014166 - 30014487
Alignment:
| Q |
131 |
actaggacaaaccgcacaaacagcacagtccacgacagagataacaaaaaccaccagaaaaatcaaattccccatctctggctcttctttccttatctac |
230 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30014166 |
actaggacaaaccgcacaaacaacacagtccacgatagagataacaaaaaccactagaaaaatcaaattccccatctctggctcttctttcctcatctac |
30014265 |
T |
|
| Q |
231 |
aaaaacagctaattggattccaccgccactcatagtacaagcacgccggaatacgataaacaacttatttccaacttatagcac-aaagcttgtatgtgt |
329 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
30014266 |
aaagacagctaattggattccaccgccactcatagtacaagcatgccggtatacgataaacaacttatttccagcttatagcacaaaagcttgtatgtgt |
30014365 |
T |
|
| Q |
330 |
aaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaaatttttatgaaaaatgtcata |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
30014366 |
aaaaataaacttgtttttgtatatgttataagctgtttatgtgagctaagcttggaccacttttgaaat----------ttttttatgaaaaatgtcata |
30014455 |
T |
|
| Q |
430 |
agttctcccttacaatctcacaaagtttatgt |
461 |
Q |
| |
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| T |
30014456 |
agttctcccttacaatctcacaaagtttatgt |
30014487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 30014080 - 30014132
Alignment:
| Q |
46 |
aaacagcccctccttgtatcaacgaaggaaggggacaccataggtgaagaaaa |
98 |
Q |
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||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
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| T |
30014080 |
aaacagcccctccttgtatcagcgaaagaaggggacaccacaggtgaagaaaa |
30014132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 201 - 461
Target Start/End: Complemental strand, 17054948 - 17054688
Alignment:
| Q |
201 |
cccatctctggctcttctttccttatctacaaaaacagctaattggattccaccgccactcatagtacaagcacgccggaatacgataaacaacttattt |
300 |
Q |
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||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
17054948 |
cccatctctggctcttctttcctcatctacaaagacaactaattggattccaccaccactcatagtacaagcacaccggaatacgataaataacttattt |
17054849 |
T |
|
| Q |
301 |
ccaacttatagcacaaagcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataa |
400 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17054848 |
tcaacttatagcacaaggcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataa |
17054749 |
T |
|
| Q |
401 |
gttggaaaatttttatgaaaaatgtcataagttctcccttacaatctcacaaagtttatgt |
461 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17054748 |
gttggaaattttttatgaaaaatgtcataagttctcccttacaatctcacaaagtttatgt |
17054688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Complemental strand, 30251549 - 30251484
Alignment:
| Q |
331 |
aaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaa |
397 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
30251549 |
aaaataaagttgttattgtatatgttataagctgttttcataagct-atcttggaccacttatgaaa |
30251484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 34430556 - 34430520
Alignment:
| Q |
331 |
aaaataaacttgtttttgtatatgttataagctgttt |
367 |
Q |
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|||||||| |||||||||||||||||||||| ||||| |
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| T |
34430556 |
aaaataaaattgtttttgtatatgttataaggtgttt |
34430520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 43505835 - 43505867
Alignment:
| Q |
285 |
gataaacaacttatttccaacttatagcacaaa |
317 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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|
| T |
43505835 |
gataaacaacttatttgcaacttatagcacaaa |
43505867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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