View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20580_high_4 (Length: 361)
Name: NF20580_high_4
Description: NF20580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20580_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 25 - 361
Target Start/End: Complemental strand, 30278534 - 30278198
Alignment:
| Q |
25 |
aagtctcttaaaatatatttaatgaacataattagaggcaaatttatttatttaattttttcaactccaattctctattgcaaatcgtgatgagtcaaac |
124 |
Q |
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| T |
30278534 |
aagtttcttaacatatatttaatgaaattaattagaggcaaatttatttatttaattttttcaactccaattctctattgcaaatcgtgatgagtcatac |
30278435 |
T |
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| Q |
125 |
aatattgcaatcacaattaagctgcaaaaacatcctaaacttttatattgtgttctaaaacattatgctaacaacacactctctaatgtattcttcccga |
224 |
Q |
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| T |
30278434 |
aatattgcaatcacaattaagctgcaaaaacatcctaaacttttatattgtgttctaaaacattatgctaacagcacactctctaatgtattcttcccga |
30278335 |
T |
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| Q |
225 |
catactctttctaattggcttgattttatgtggatctcactaacttacatttacgtgggatttgcatagtttagtgaaatccatttagatttatatccgt |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |
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| T |
30278334 |
catactctttctaattggcttgattttatgtggatctcactaacttacatttacgtgagatttgcatagtttagtgaaatccatttaaatttatatctat |
30278235 |
T |
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| Q |
325 |
taaagagaatgtgttaaaaagtgtgttgcattatatt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30278234 |
taaagagaatgtgttaaaaagtgtgttgcattatatt |
30278198 |
T |
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