View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20580_low_1 (Length: 474)

Name: NF20580_low_1
Description: NF20580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20580_low_1
NF20580_low_1
[»] chr4 (15 HSPs)
chr4 (27-457)||(3671640-3672071)
chr4 (243-403)||(55635535-55635696)
chr4 (243-403)||(54861868-54862028)
chr4 (243-399)||(55665264-55665423)
chr4 (68-241)||(55659293-55659466)
chr4 (62-241)||(55635267-55635446)
chr4 (243-394)||(54627314-54627465)
chr4 (303-399)||(52985562-52985658)
chr4 (62-230)||(54862124-54862292)
chr4 (62-230)||(55665516-55665684)
chr4 (243-406)||(55659042-55659208)
chr4 (261-403)||(50191742-50191884)
chr4 (62-229)||(54627049-54627216)
chr4 (71-156)||(52985831-52985916)
chr4 (408-457)||(54861725-54861774)
[»] chr8 (4 HSPs)
chr8 (54-241)||(9889544-9889731)
chr8 (239-406)||(9889810-9889977)
chr8 (406-457)||(9890056-9890107)
chr8 (20-48)||(9889417-9889445)
[»] chr2 (3 HSPs)
chr2 (243-403)||(13401715-13401875)
chr2 (62-228)||(13401445-13401611)
chr2 (408-457)||(13401970-13402019)
[»] chr1 (2 HSPs)
chr1 (284-360)||(37310524-37310600)
chr1 (305-360)||(22514483-22514538)
[»] chr7 (1 HSPs)
chr7 (284-359)||(46154649-46154724)


Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 27 - 457
Target Start/End: Complemental strand, 3672071 - 3671640
Alignment:
Q  27 gttcacctagtgttgctgttcgacatgaggcttcatgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgc 126  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3672071 gttcacctagtgttgctgttcgacatgaagcttcatgggcgttgggaaacgttgcctgtgattcccctagttgccgtgatcttgttctcagtcatggtgc 3671972  T
Q  127 catgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaa 226  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  3671971 catgatcccgctgttatcccacttgaatgagcttacagatatttctatgctgagagttgcaacgcgaaccctgtcaaacttttgcatgggcaaaccacaa 3671872  T
Q  227 cccctgtttgagcagttgaggccagcacttcccactctcgagcgtttgatt-ttttccaatgatcaagaagtcctggcagatgcatgctgggcactctca 325  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3671871 cccctgtttgagcagttgacgccagcacttcccactctcgagcgtttgatttttttccaatgatcaagaagtcatggcagatgcatgctgggcactctca 3671772  T
Q  326 tatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttgaacccatctccttcagtgg 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3671771 tatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagactggtggagctcctttcgaacccatctccttcagtgg 3671672  T
Q  426 tgattcctgcacttcgcacattgggaaatatt 457  Q
    ||||||||||||| ||||||||||||||||||    
T  3671671 tgattcctgcactccgcacattgggaaatatt 3671640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 243 - 403
Target Start/End: Original strand, 55635535 - 55635696
Alignment:
Q  243 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcat-atctttctgatggaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  55635535 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatgaagaagtcctgtcagatgcatgctgggcactctcataatatttctgatggaa 55635634  T
Q  342 caaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 403  Q
      ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  55635635 tgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctcctt 55635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 243 - 403
Target Start/End: Complemental strand, 54862028 - 54861868
Alignment:
Q  243 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 342  Q
    |||||||||| |||||| ||||| ||| |||| |||||||||| ||  ||||||||||  | |||||||| ||||||||||| |||||||||||||||||    
T  54862028 tgaggccagcgcttcccgctctcaagcatttggttttttccaaagacgaagaagtcctaaccgatgcatggtgggcactctcgtatctttctgatggaac 54861929  T
Q  343 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 403  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54861928 aaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagactggtgcagctcctt 54861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 243 - 399
Target Start/End: Complemental strand, 55665423 - 55665264
Alignment:
Q  243 tgaggccagcacttcccactctcgagcgtttgattttttccaatga---tcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatgg 339  Q
    |||||||||| || ||| |||| |||||||||||||| ||||||||   | |||||||||||   |||||||| |||||| |||||||||||||||||||    
T  55665423 tgaggccagcgctgccctctcttgagcgtttgattttgtccaatgacgatgaagaagtcctgagtgatgcatgttgggcattctcatatctttctgatgg 55665324  T
Q  340 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 399  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55665323 aacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagct 55665264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 55659466 - 55659293
Alignment:
Q  68 ttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagata 167  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||  ||| |      
T  55659466 ttgggaaatgttgccggtgattcccctagttgtcgtgatcttgttctcagtcatggtgcgttgatcccgctgttatcccagttgaatgagcaagcaaagc 55659367  T
Q  168 tttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 241  Q
    ||||||||||||||||||| |||    ||||||||||||||||||| || ||||||| |||||  |||||||||    
T  55659366 tttctatgctgagaattgctacgttggccctgtcaaacttttgcagaggaaaaccaccacccccatttgagcag 55659293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 55635267 - 55635446
Alignment:
Q  62 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 161  Q
    ||||| ||||||||||||||| |||| |||||| | || ||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||  |    
T  55635267 tgggcattgggaaacgttgccggtgagtccccttggtgccgtgatcttgttctcagtcatggtgccctgattccactgttatcccagttgaatgagcaag 55635366  T
Q  162 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 241  Q
    ||    ||||||||||||||||||| ||  | ||| ||||||||||||||||||| || ||||||||||| |||||||||    
T  55635367 caaggctttctatgctgagaattgccacatggaccttgtcaaacttttgcaggggaaagccacaacccctatttgagcag 55635446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 54627314 - 54627465
Alignment:
Q  243 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 342  Q
    ||||| |||| |||||| ||||| || ||||| |||||||||| ||| |||  |||||| | || ||||| ||||||||||| |||||||||||||||||    
T  54627314 tgaggtcagcgcttcccgctctcaagtgtttggttttttccaaagatgaagtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaac 54627413  T
Q  343 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtg 394  Q
    || ||| || |||||||||||||||||||||||||||||||| |||||||||    
T  54627414 aagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtg 54627465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 52985658 - 52985562
Alignment:
Q  303 cagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 399  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  52985658 cagatgcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagct 52985562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 62 - 230
Target Start/End: Complemental strand, 54862292 - 54862124
Alignment:
Q  62 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 161  Q
    ||||| ||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |       
T  54862292 tgggcattgggaaacattgctggtgattcccctaggtgtcgtgatcttgttctcagtcatggtgccctgatcccgctgttatcccagttgaatgaccaaa 54862193  T
Q  162 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccc 230  Q
    ||||  ||| |||  |||||| ||| |   | ||| |||||||||||||||||||||| ||||||||||    
T  54862192 cagagctttatatattgagaaatgccatttggaccttgtcaaacttttgcaggggcaagccacaacccc 54862124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 62 - 230
Target Start/End: Complemental strand, 55665684 - 55665516
Alignment:
Q  62 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 161  Q
    ||||| ||||||||| ||||| ||||||||||||| || |||||||||||| |||||||||||||  |||||||||||||| |||| ||||||||||  |    
T  55665684 tgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgttttcagtcatggtgcgctgatcccgctgttaacccagttgaatgagcaag 55665585  T
Q  162 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccc 230  Q
    || |  |||||||||||||| |||| ||| | |||||||||| ||||||||  ||||| |||| |||||    
T  55665584 caaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccc 55665516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 243 - 406
Target Start/End: Complemental strand, 55659208 - 55659042
Alignment:
Q  243 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttct---gatgg 339  Q
    |||||| ||||||||| || |||  |||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||    ||||    
T  55659208 tgaggcaagcacttcctaccctcaggcgtttgattttttccaatgatgaagaagtcgtgacagaagcatgctgggcactctcatatctttctaaatatgg 55659109  T
Q  340 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 406  Q
      |||||||| ||||||||||||| |||||||| ||  ||||||  ||||| || ||||||||||||    
T  55659108 ttcaaatgacgaaatccaagcggtaatcgaggctggcatatgtgatagactagtagagctccttttg 55659042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 403
Target Start/End: Complemental strand, 50191884 - 50191742
Alignment:
Q  261 ctctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 360  Q
    |||| |||||||||||||| ||  | ||| ||||||| ||| ||||||| ||||||||  | ||||| || |||||||| |||||||||||||||||||     
T  50191884 ctcttgagcgtttgattttgtcggaggatgaagaagttctgacagatgcctgctgggctttatcatacctatctgatggcacaaatgacaaaatccaaga 50191785  T
Q  361 ggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 403  Q
      | || || ||||||||||||||| || ||||| ||||||||    
T  50191784 aattattgacgcaggtgtatgtggccgattggtgcagctcctt 50191742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 54627049 - 54627216
Alignment:
Q  62 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 161  Q
    ||||| ||||||||| ||||  |||||||||||||  | |||||||||||||||||||| |||||| ||||||  || ||||||||  |||||||||  |    
T  54627049 tgggcattgggaaacattgctggtgattcccctagaggccgtgatcttgttctcagtcacggtgccctgatcctacttttatcccagctgaatgagcaag 54627148  T
Q  162 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaaccc 229  Q
     ||   ||| || |||||||| |||     | || ||||||||||||||||||||||| |||||||||    
T  54627149 aagggctttataggctgagaaatgccgtttggacgctgtcaaacttttgcaggggcaagccacaaccc 54627216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 52985916 - 52985831
Alignment:
Q  71 ggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatga 156  Q
    ||||||||||||  |||||||||||  || |||||||||||| |||||||||||||| |||||||  || ||||||| || |||||    
T  52985916 ggaaacgttgccgttgattcccctatgtgccgtgatcttgttttcagtcatggtgccttgatcccattgctatcccagttcaatga 52985831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 54861774 - 54861725
Alignment:
Q  408 acccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 457  Q
    ||||||||||||||||| |||||||||   |||||||| |||||||||||    
T  54861774 acccatctccttcagtgctgattcctgtcgttcgcacaatgggaaatatt 54861725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 54 - 241
Target Start/End: Original strand, 9889544 - 9889731
Alignment:
Q  54 aggcttcatgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaa 153  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889544 aggcttcgtgggcgttgggaaacgttgcctgtgattcccctagttgccgttatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaa 9889643  T
Q  154 tgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 241  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9889644 tgagctagcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgtaggggcaaaccgcaacccctgtttgagcag 9889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 239 - 406
Target Start/End: Original strand, 9889810 - 9889977
Alignment:
Q  239 cagttgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 338  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889810 cagttgaggccagcacttcccactctcgagcttttgattttttccaatgatgaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 9889909  T
Q  339 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889910 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 9889977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 9890056 - 9890107
Alignment:
Q  406 gaacccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 457  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9890056 gaacccttctccttcagtggtgattcctgcacttcgcacattgggaaatatt 9890107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 9889417 - 9889445
Alignment:
Q  20 ctactcagttcacctagtgttgctgttcg 48  Q
    |||||||||||||||||||||||||||||    
T  9889417 ctactcagttcacctagtgttgctgttcg 9889445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 243 - 403
Target Start/End: Original strand, 13401715 - 13401875
Alignment:
Q  243 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 342  Q
    ||||||||||||||||  |||| ||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  13401715 tgaggccagcacttccggctcttgagcgtttggttttttcaaatgatgaagaagtcctgacagatgcatgctgggcactctcttatctttctgatggaac 13401814  T
Q  343 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 403  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  13401815 aaatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagactagtgcagctcctt 13401875  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 13401445 - 13401611
Alignment:
Q  62 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 161  Q
    ||||| |||||||| |||||  ||||||| ||||| || || ||||||||||| || ||||||||| |||||||||||||| |||| ||||||||||  |    
T  13401445 tgggcattgggaaatgttgctggtgattcacctaggtgccgcgatcttgttcttagccatggtgccctgatcccgctgttaacccagttgaatgagcagg 13401544  T
Q  162 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacc 228  Q
    || |  |||| |||||||||| ||| ||  | || ||||||||||||||||||||||| ||||||||    
T  13401545 caaagctttcaatgctgagaaatgccacatggactctgtcaaacttttgcaggggcaagccacaacc 13401611  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 13401970 - 13402019
Alignment:
Q  408 acccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 457  Q
    ||||||||||||||||| |||| ||||||||||||||  |||||||||||    
T  13401970 acccatctccttcagtgctgatccctgcacttcgcacggtgggaaatatt 13402019  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 37310600 - 37310524
Alignment:
Q  284 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 360  Q
    |||||| |||||||| || | ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||    
T  37310600 aatgatgaagaagtcttgactgatgcctgctgggcactatcatatctttctgatggtacaaacgataaaattcaagc 37310524  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 22514538 - 22514483
Alignment:
Q  305 gatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 360  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  22514538 gatgcctgctgggcactatcatatctttctgatggtacaaatgaaaaaattcaagc 22514483  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 46154724 - 46154649
Alignment:
Q  284 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaag 359  Q
    |||||| |||||||| || | ||||| || |||||||| |||||||||||||||||  ||||||||||||| ||||    
T  46154724 aatgatgaagaagtcttgactgatgcctgttgggcactttcatatctttctgatggtgcaaatgacaaaattcaag 46154649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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