View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20580_low_3 (Length: 370)
Name: NF20580_low_3
Description: NF20580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20580_low_3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 38872076 - 38872444
Alignment:
| Q |
1 |
tcatgcctaactaagattaggctccattataatgcctaaccattcttcactgcatagtaacaagaagaatttgttggattggcaactaaacttaaaattg |
100 |
Q |
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| T |
38872076 |
tcatgccgaactaagattaggctccgttataatgcccaaccattcttcagtgcatagtaacaagaagaatttgttggattgacaactagacttaaaattg |
38872175 |
T |
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| Q |
101 |
ttgttgatgctgttgagggactttcttatttgcatcttgattgtgttgttcctattgttcatagcctatgaatcatacggatgtagaatctagcaaaata |
200 |
Q |
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| T |
38872176 |
ctgttgatgctgttgagggactttcttatttgcatcatgattgtgttgttcctattgttcatagcctatgaatcatagggatgtagaatctagcaaaata |
38872275 |
T |
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| Q |
201 |
gggatgtaatcaaatatgtcggtgtcttgatgatgtatgtcaccaacacatgttggacacaacatcaatgtgaagaaatgatgcaacataatatatcatt |
300 |
Q |
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| T |
38872276 |
gagatgtaatcaaatatgtc-gtgtcttgatgatgtatgtcaccaacacatgtcggacacaacatcaatgtgaagaaatgatgcaacatagtatatcatt |
38872374 |
T |
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| Q |
301 |
attaaactatataatatttacttatcttaaactatgatcatgannnnnnnattgacaacgagcgatagtc |
370 |
Q |
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| T |
38872375 |
attaaactatataatatttacttatcttaaactatgatcatgatttttttattgacaacgagcaatagtc |
38872444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 2 - 343
Target Start/End: Original strand, 38875241 - 38875573
Alignment:
| Q |
2 |
catgcctaactaagattaggctccattataatgcctaaccattcttcactgcatagtaacaagaagaatttgttggattggc-aactaaacttaaaattg |
100 |
Q |
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| T |
38875241 |
catgcctaactaagattaggctcctctataatgcctaaccattcttctttgcatagtagcaagaagaatttgttggattggctaactagacttaaaattg |
38875340 |
T |
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| Q |
101 |
ttgttgatgctgttgagggactttcttatttgcatcttgattgtgttgttcctattgttcatagcctatgaatcatacggatgtagaatctagcaaaata |
200 |
Q |
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| T |
38875341 |
ttgtagatgctgctgggggactttcttatttgcattatgatagtgttgttcttattgttcatag--------------ggatgtaaaatctagcaaaata |
38875426 |
T |
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| Q |
201 |
gggatgtaatcaaatatgtcggtgtcttgatgatgtatgtcaccaacacatgttggacacaacatcaatgtgaagaaatgatgcaacataatatatcatt |
300 |
Q |
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| T |
38875427 |
ggaatgtaatcaaatgtgtcggtgtcttgacgatatatgtcaccaacacatgtcggacacaacttcaatgtgaagaattgatgctacatagtatatcatt |
38875526 |
T |
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| Q |
301 |
attaaactatataatatttactta----tcttaaactatgatcatga |
343 |
Q |
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| T |
38875527 |
attaaactatataatatttacttatcattcttaaactatgatcatga |
38875573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 38868216 - 38868330
Alignment:
| Q |
51 |
tgcatagtaacaagaagaatttgttggattggc-aactaaacttaaaattgttgttgatgctgttgagggactttcttatttgcatcttgattgtgttgt |
149 |
Q |
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| T |
38868216 |
tgcatagtagcaagaagaatttgttggattggccaacaagacttaaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttgt |
38868315 |
T |
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| Q |
150 |
tcctattgttcatag |
164 |
Q |
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| T |
38868316 |
tcctattgttcatag |
38868330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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