View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20580_low_8 (Length: 237)
Name: NF20580_low_8
Description: NF20580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20580_low_8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 38871722 - 38871946
Alignment:
| Q |
18 |
taatcgataaattaaa-gcatcaccaacttcatatttgtttattccctnnnnnnnnn----cttcatatttgtttacaattatggcaatgacaaagacaa |
112 |
Q |
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| T |
38871722 |
taatcgataaattaaaagcatcaccaacttcatatttgtttattccctaaaaaaaaaaaaacttcatatttgtttacaattatggtaatgacaaagacaa |
38871821 |
T |
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| Q |
113 |
cattggctgtgttccttagtgctctttttgatttccacacttttaactcaagatgtcgaggctgtcaattttatcggtaatcctgcaatgcaaagagaca |
212 |
Q |
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| T |
38871822 |
cattggttgtgttccttagtgctctttttgatttccacacttttaactcaagatgtcgaggctgtcaattttatcggtaatcctgcaatgcaaagagaca |
38871921 |
T |
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| Q |
213 |
ctatcccatacagcagaagaaatcc |
237 |
Q |
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| T |
38871922 |
ctatcccatacaacagaagaaatcc |
38871946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 38782871 - 38782709
Alignment:
| Q |
74 |
cttcatatttgtttacaattatggcaatgacaaagacaacattggctgtgttccttagtgctctttttgatttccacacttttaactcaagatgtcgagg |
173 |
Q |
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| T |
38782871 |
cttcatatttaattacgattatggcaatgacaaagacaacattggttgtgtttcttagtgctctttt-gatttgcacactttttactcaagatgttgagg |
38782773 |
T |
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| Q |
174 |
ctgtcaattttatcggtaatcctgcaatgcaaagagacactatcccatacagcagaagaaatcc |
237 |
Q |
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| T |
38782772 |
ctgtcaatattatcggtaatcctgcaatgcaaagagacactatcccatgcaacagaagaaatcc |
38782709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 38874945 - 38875097
Alignment:
| Q |
74 |
cttcatatttgtttacaattatggcaatgacaaagacaacattggctgtgttccttagtgctctttttgatttccacacttttaactcaagatgtcgagg |
173 |
Q |
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| T |
38874945 |
cttcatatttatttacgattatggcaatgacaaagacaacattggttgcgttccttagtgctctttt-gatttgcacatttgtaactcaagacgttgagg |
38875043 |
T |
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| Q |
174 |
ctgtcaattttatcggtaatcctgcaatgcaaagagacactatcccatacagca |
227 |
Q |
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| T |
38875044 |
ctggcaatgttatcagtaatcctgcaatgcaaagagacactatcccatgcagca |
38875097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 38782895 - 38782862
Alignment:
| Q |
20 |
atcgataaattaaagcatcaccaacttcatattt |
53 |
Q |
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| T |
38782895 |
atcgataaattaaatcatcaccaacttcatattt |
38782862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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