View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20580_low_9 (Length: 235)

Name: NF20580_low_9
Description: NF20580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20580_low_9
NF20580_low_9
[»] chr4 (8 HSPs)
chr4 (78-220)||(23974315-23974457)
chr4 (76-220)||(19611680-19611824)
chr4 (79-151)||(25126064-25126135)
chr4 (88-151)||(14645954-14646017)
chr4 (88-151)||(13884119-13884182)
chr4 (78-147)||(15706862-15706931)
chr4 (76-152)||(18873768-18873845)
chr4 (77-125)||(11153979-11154027)
[»] chr8 (5 HSPs)
chr8 (76-220)||(9883813-9883957)
chr8 (76-151)||(42147609-42147684)
chr8 (76-151)||(40391564-40391639)
chr8 (88-151)||(15113416-15113479)
chr8 (76-152)||(17290819-17290895)
[»] scaffold0281 (1 HSPs)
scaffold0281 (76-220)||(1994-2138)
[»] chr6 (6 HSPs)
chr6 (76-220)||(12980270-12980414)
chr6 (76-151)||(19893060-19893135)
chr6 (76-125)||(19768908-19768957)
chr6 (88-147)||(19566719-19566779)
chr6 (111-151)||(19565070-19565110)
chr6 (76-123)||(9548951-9548998)
[»] scaffold0323 (1 HSPs)
scaffold0323 (76-220)||(16437-16580)
[»] chr1 (7 HSPs)
chr1 (76-151)||(12786428-12786503)
chr1 (76-151)||(9131509-9131584)
chr1 (76-151)||(18513647-18513722)
chr1 (76-123)||(12484114-12484161)
chr1 (171-220)||(12484074-12484123)
chr1 (173-205)||(12786508-12786540)
chr1 (171-211)||(41136685-41136725)
[»] chr7 (7 HSPs)
chr7 (76-151)||(11508538-11508613)
chr7 (76-125)||(18147481-18147530)
chr7 (76-151)||(32945499-32945574)
chr7 (91-148)||(3312842-3312900)
chr7 (94-151)||(33721451-33721508)
chr7 (171-220)||(18147410-18147459)
chr7 (88-120)||(34424973-34425005)
[»] chr5 (1 HSPs)
chr5 (76-147)||(21143764-21143835)
[»] chr3 (7 HSPs)
chr3 (88-154)||(9733449-9733515)
chr3 (88-151)||(18705351-18705414)
chr3 (76-151)||(3593265-3593345)
chr3 (76-151)||(3290821-3290896)
chr3 (76-147)||(18534266-18534337)
chr3 (88-125)||(15777217-15777254)
chr3 (76-125)||(39727609-39727658)
[»] chr2 (5 HSPs)
chr2 (76-151)||(32623429-32623504)
chr2 (88-147)||(16093726-16093785)
chr2 (177-216)||(16093798-16093837)
chr2 (177-220)||(27386731-27386774)
chr2 (88-151)||(20263536-20263595)
[»] scaffold0005 (1 HSPs)
scaffold0005 (88-151)||(171273-171336)
[»] scaffold0978 (1 HSPs)
scaffold0978 (76-152)||(2995-3071)
[»] scaffold0019 (1 HSPs)
scaffold0019 (94-152)||(183153-183212)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 23974315 - 23974457
Alignment:
Q  78 ttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttcaactaagtttgttactaaagattcc 177  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23974315 ttataagttgtaattgagtttgttaccgatcgttttagattactatatttcctctaggtttgttactaatctttcaactaagtttgttactaaagattcc 23974414  T
Q  178 tatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  23974415 tatctgcacctctcgaatttgttactattctttcagtaactac 23974457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 19611824 - 19611680
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttcaactaagtttgttactaaagatt 175  Q
    ||||||||| | |||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  19611824 atttataagctttaattgagtttgttaccaatctttttagatttatatatgtcctctaggtttgttactaatctttcagctaagtttgttactaaagatt 19611725  T
Q  176 cctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  19611724 cctatctgcacctctcgaatttgttactattctttcagtaactac 19611680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 25126135 - 25126064
Alignment:
Q  79 tataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    |||||| | |||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||    
T  25126135 tataagctctaattgagtttgttac-aatctttttagattactaaatgtcctctaggtttgttactaatcttt 25126064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 14645954 - 14646017
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    |||||||||||||||||||| |||||||||| |||||| |  ||||||||||||||||||||||    
T  14645954 taattgagtttgttaccaatttttttagatttctatatgttctctaggtttgttactaatcttt 14646017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 13884182 - 13884119
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||||||| |||  |||||||    
T  13884182 taattgagtttgttaccaaactttttagattactatatgtcctctaggtttattaacaatcttt 13884119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 15706862 - 15706931
Alignment:
Q  78 ttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaat 147  Q
    ||||||| | |||||||||||||||| |||||||| | |||||||||| |  ||||||||||||||||||    
T  15706862 ttataagctctaattgagtttgttacaaatcttttcacattactatatgttctctaggtttgttactaat 15706931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 18873768 - 18873845
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatat-ttcttctaggtttgttactaatctttc 152  Q
    ||||||||||| ||||| |||||||||  |||||||| |||||||||||| | | |||| ||||||||||||||||||    
T  18873768 atttataagttctaatttagtttgttattaatcttttcagattactatatgtacctctaagtttgttactaatctttc 18873845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 11153979 - 11154027
Alignment:
Q  77 tttataagttgtaattgagtttgttaccaatctttttagattactatat 125  Q
    |||||||| | |||||||||||||||||||||||||||||||| |||||    
T  11153979 tttataagctctaattgagtttgttaccaatctttttagattagtatat 11154027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 9883813 - 9883957
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttcaactaagtttgttactaaagatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||| |||||||||||||||||||||    
T  9883813 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcctctatatttgttattaatctttcagctaagtttgttactaaagatt 9883912  T
Q  176 cctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||    
T  9883913 cctagctgcacctctcgaatttgttactattctttcagtaactac 9883957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 42147609 - 42147684
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  42147609 atttataagttataattgagtttgttaccaatctttttagattactatatgtcctctatgtttgttactaatcttt 42147684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 40391564 - 40391639
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||| ||||||    
T  40391564 atttataagctctaattgagtttgttaccaatctttttatattactatatgtcctctagttttgttacttatcttt 40391639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 15113416 - 15113479
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    |||||||||||||||||||||||||||| ||||||||| |  ||||||| ||||||||||||||    
T  15113416 taattgagtttgttaccaatctttttagcttactatatattctctaggtgtgttactaatcttt 15113479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 17290819 - 17290895
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttc 152  Q
    ||||||||| | ||||||||||| |||| ||| ||||||||||||||||| |  |||||||||||| ||||||||||    
T  17290819 atttataagctctaattgagtttattacaaatatttttagattactatatgttctctaggtttgttgctaatctttc 17290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 1994 - 2138
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttcaactaagtttgttactaaagatt 175  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||    
T  1994 atttataagttataattgagtttgttaccaatctttttagattactatatttcctctaagtttgttactaatatttcagctaagtttgttactaaagatt 2093  T
Q  176 cctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    ||||||||||  ||||||||||||||||||||||||  |||||||    
T  2094 cctatctgcatgtctcgaatttgttactattctttcattaactac 2138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 12980414 - 12980270
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttcaactaagtttgttactaaagatt 175  Q
    ||||||||| | ||||||||||||||| ||||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||||    
T  12980414 atttataagctctaattgagtttgttatcaatctttttagatttctatatgtcgtctaggtttgttactaatctttcagctaagtttgttactaacgatt 12980315  T
Q  176 cctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  12980314 cctatctgcacctctcgaatttgttactattctttcagtaactac 12980270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 19893060 - 19893135
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  19893060 atttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctagatttgttactaatcttt 19893135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 19768957 - 19768908
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatat 125  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  19768957 atttataagctctaattgagtttgttaccaatctttttagattactatat 19768908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 19566779 - 19566719
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttct-aggtttgttactaat 147  Q
    |||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||    
T  19566779 taattgagtttgttaccaatctttttagattactatatgtcctctaagttttgttactaat 19566719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 19565110 - 19565070
Alignment:
Q  111 tttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  19565110 tttagattactatatgtcctctaggtttgttactaatcttt 19565070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 9548951 - 9548998
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactat 123  Q
    ||||||||| | |||||||||||||||||||| | |||||||||||||    
T  9548951 atttataagctctaattgagtttgttaccaatttctttagattactat 9548998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 16437 - 16580
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttcaactaagtttgttactaaagatt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||| |||||||||||||||||||||||| ||||    
T  16437 atttataagttgtaattgagtttgttaccaatctttttagattagtatgtttcctccaggtttgttactattctttcaactaagtttgttactaaggatt 16536  T
Q  176 cctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
     |||||| |||||||| ||||||||||||||||||| ||||||||    
T  16537 -ctatctacacctctcaaatttgttactattctttcagtaactac 16580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 12786428 - 12786503
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  12786428 atttataagctctaattgagtttgttaccaatctttttatattactatatgtcttctaggtttgttactaatcttt 12786503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 9131584 - 9131509
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||| ||| || |||| |||||||||||||||||    
T  9131584 atttataagctttaattgagtttgttaccaatcgttttagattactctatgtcctctaagtttgttactaatcttt 9131509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 18513722 - 18513647
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    |||||||| || |||| |||||||||||| || ||||||||||||||||| || |||| |||||||||||||||||    
T  18513722 atttataacttctaatcgagtttgttaccgatttttttagattactatatgtcctctaagtttgttactaatcttt 18513647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 12484161 - 12484114
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactat 123  Q
    ||||||||| | |||||||||||||||| |||||||| ||||||||||    
T  12484161 atttataagctctaattgagtttgttactaatcttttcagattactat 12484114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 12484123 - 12484074
Alignment:
Q  171 agattcctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    ||||| |||||||||||||| || ||||||||||||||||  ||||||||    
T  12484123 agattactatctgcacctctagattttgttactattctttttgtaactac 12484074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 12786508 - 12786540
Alignment:
Q  173 attcctatctgcacctctcgaatttgttactat 205  Q
    ||| |||||||||||||||||||||||||||||    
T  12786508 attactatctgcacctctcgaatttgttactat 12786540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 41136725 - 41136685
Alignment:
Q  171 agattcctatctgcacctctcgaatttgttactattctttc 211  Q
    ||||| ||||| ||| |||||||||||||||||||||||||    
T  41136725 agattactatcggcagctctcgaatttgttactattctttc 41136685  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 11508613 - 11508538
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||    
T  11508613 atttataagctctaattgagtttgttaccaatttttttagattactatatgtcctccaggtttgttactaatcttt 11508538  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 18147530 - 18147481
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatat 125  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  18147530 atttataagctctaattgagtttgttaccaatctttttagattactatat 18147481  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 32945499 - 32945574
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | |||| |||||||||| |||||||||||  ||| ||||| || ||||| ||||||||||||||||    
T  32945499 atttataagctttaatagagtttgttatcaatctttttatgttaatatatgtcctctagatttgttactaatcttt 32945574  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 3312842 - 3312900
Alignment:
Q  91 ttgagtttgttaccaatctttttagattactatattt-cttctaggtttgttactaatc 148  Q
    ||||||||||||| ||||||||||||||||||| ||| | |||| ||||||||||||||    
T  3312842 ttgagtttgttactaatctttttagattactatgtttacctctatgtttgttactaatc 3312900  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 33721451 - 33721508
Alignment:
Q  94 agtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||| |||||||||||||||||||||||| | | || || |||||||||||||||||    
T  33721451 agtttattaccaatctttttagattactatgtgtattataagtttgttactaatcttt 33721508  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 18147459 - 18147410
Alignment:
Q  171 agattcctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    ||||| ||||||||||||||  | ||||||||||||||||| ||||||||    
T  18147459 agattactatctgcacctctatattttgttactattctttcagtaactac 18147410  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 34424973 - 34425005
Alignment:
Q  88 taattgagtttgttaccaatctttttagattac 120  Q
    |||||||||||||||| ||||||||||||||||    
T  34424973 taattgagtttgttactaatctttttagattac 34425005  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 21143835 - 21143764
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaat 147  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  21143835 atttataagctctaattgagtttgttaccaatcttttcagattactatatgtcctctaggtttgttactaat 21143764  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 9733515 - 9733449
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttcaa 154  Q
    ||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  9733515 taattgagtatgttaccaatctttttagattactatatgtcctccaggtttgttactaatctttcaa 9733449  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 18705414 - 18705351
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||    
T  18705414 taattgagtttgttaccaatatttttagattactatatgtcctctagctttgttactaatcttt 18705351  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 3593265 - 3593345
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttc-----ttctaggtttgttactaatcttt 151  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||| ||      ||||||||||||||||||||||    
T  3593265 atttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctagtctaggtttgttactaatcttt 3593345  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 3290821 - 3290896
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | || |||||||||||||||||||||||| |||||||||| |  |||||| |||||||||||||||    
T  3290821 atttataagctctagttgagtttgttaccaatctttttaaattactatatgttctctaggcttgttactaatcttt 3290896  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 18534337 - 18534266
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaat 147  Q
    |||||||| || ||||| ||||||||| ||||||||||| ||||||||||||| ||||  |||||| |||||    
T  18534337 atttataaattctaattaagtttgttagcaatctttttaaattactatatttcctctatatttgttgctaat 18534266  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 15777254 - 15777217
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatat 125  Q
    |||||||||||||||||||||| |||||||||||||||    
T  15777254 taattgagtttgttaccaatctgtttagattactatat 15777217  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 39727658 - 39727609
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatat 125  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| |||||    
T  39727658 atttataagctctaattgagtttgttatcaatctttttagattattatat 39727609  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 32623504 - 32623429
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    ||||||||| | ||||| ||||||| || ||||||||||||||||||||| || ||||||||||||||||||||||    
T  32623504 atttataaggtctaattaagtttgtcactaatctttttagattactatatgtcatctaggtttgttactaatcttt 32623429  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 16093726 - 16093785
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaat 147  Q
    ||||||||||||||||| ||||||||| |||||||||| || |||| |||| ||||||||    
T  16093726 taattgagtttgttacctatctttttaaattactatatgtcctctaagttttttactaat 16093785  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 16093798 - 16093837
Alignment:
Q  177 ctatctgcacctctcgaatttgttactattctttcggtaa 216  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  16093798 ctatctgcacctctcgaatttgttactattatttctgtaa 16093837  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 27386774 - 27386731
Alignment:
Q  177 ctatctgcacctctcgaatttgttactattctttcggtaactac 220  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||    
T  27386774 ctatctgcacctctcaaatttgttactattatttctgtaactac 27386731  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 20263595 - 20263536
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    |||||||||||||||||||||||| ||||||||    | || | ||||||||||||||||||||    
T  20263595 taattgagtttgttaccaatctttatagattac----tgtcctttaggtttgttactaatcttt 20263536  T

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Target: scaffold0005 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 171336 - 171273
Alignment:
Q  88 taattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatcttt 151  Q
    |||||||||||||||||||| |||||||||| |||||| |  ||||||||||||||||||||||    
T  171336 taattgagtttgttaccaatttttttagatttctatatgttctctaggtttgttactaatcttt 171273  T

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Target: scaffold0978 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 2995 - 3071
Alignment:
Q  76 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcttctaggtttgttactaatctttc 152  Q
    ||||||||| | |||||||||||||||| | |||||| |||||||||||| |  ||||| |||||||||||||||||    
T  2995 atttataagctctaattgagtttgttacaactcttttcagattactatatgttctctagatttgttactaatctttc 3071  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 183153 - 183212
Alignment:
Q  94 agtttgttaccaatctttttagattactatat-ttcttctaggtttgttactaatctttc 152  Q
    |||||||||| |||||||| |||||||||||| | | |||||||||||||||||||||||    
T  183153 agtttgttactaatcttttcagattactatatgtacctctaggtttgttactaatctttc 183212  T

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