View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20581_high_1 (Length: 653)

Name: NF20581_high_1
Description: NF20581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20581_high_1
NF20581_high_1
[»] chr1 (1 HSPs)
chr1 (12-634)||(8437280-8437894)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 12 - 634
Target Start/End: Complemental strand, 8437894 - 8437280
Alignment:
Q  12 atgaatgatactgttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgagggacatggaagttgttcaggttcctacttttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437894 atgaatgatactgttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgagggacatggaagttgttcaggttcctacttttt 8437795  T
Q  112 tgttcattagagatggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaattctcaggtaccaaggagttcgtgttactta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437794 tgttcattagagatggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaattctcaggtaccaaggagttcgtgttactta 8437695  T
Q  212 tt------aaatcaaatcaattgcttgttcatgtttgtattgatcataaacnnnnnnnnnnnnnnnnnnnngttaaggatttgtctcactgatttcattt 305  Q
    ||      |||||||||||||||||||||||||| ||||||||||||||||                    |||||||||||||||||||||||||||||    
T  8437694 ttaaaatcaaatcaaatcaattgcttgttcatgtgtgtattgatcataaacatatttttgtgagatatatagttaaggatttgtctcactgatttcattt 8437595  T
Q  306 ttcgaaagatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctcc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437594 ttcgaaagatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctcc 8437495  T
Q  406 acacacttcactaagttataactaatgtaaaaagttannnnnnnngcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaac 505  Q
    |||||||||           |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437494 acacacttc-----------actaatgtaaaaagtta--ttttttgcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaac 8437408  T
Q  506 tagaattgtatcaatgcaaataattaagaggaaattaaaataagctagtgaataatccaagagctgaccatgaaaaaccatatttgtttaata----tta 601  Q
    ||||||||||||||||||||    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    |||    
T  8437407 tagaattgtatcaatgcaaa----taagaggaaattaaaagaagctagtgactaatccaagagctgaccatgaaaaaccatatttgtttaatattactta 8437312  T
Q  602 cttgtcgtcataatcttatggtatggcatttga 634  Q
    ||| |||| ||||||||||||||||||||||||    
T  8437311 cttttcgt-ataatcttatggtatggcatttga 8437280  T

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