View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20581_high_2 (Length: 433)
Name: NF20581_high_2
Description: NF20581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20581_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 50201773 - 50201646
Alignment:
| Q |
293 |
tctctgtcttctctaaactcttcttgcaaagcaaatagaggagaggatattgagatttggagaaagcaattttaatatagagcattagaatcaatcaaca |
392 |
Q |
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| T |
50201773 |
tctctgtcttctctaacctcttcttgcaaagcaaatagaggagaggatattgagatttggagaaagcaattttaatatagagcattagaatcaatcaaca |
50201674 |
T |
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| Q |
393 |
atttcacaatcatgtgcaacacatatat |
420 |
Q |
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| T |
50201673 |
atttcacaatcatgtccaacacatatat |
50201646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 50201845 - 50201781
Alignment:
| Q |
15 |
catcacaaaattcattacacttcagtataaaacataaaatgtgttttatactaagttctgctaaa |
79 |
Q |
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| T |
50201845 |
catcacaaaattcattacacttcagtataaaatataaaatgtgttttatactaagttctgctaaa |
50201781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 28009503 - 28009535
Alignment:
| Q |
381 |
aatcaatcaacaatttcacaatcatgtgcaaca |
413 |
Q |
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| T |
28009503 |
aatcaatcaacaatttcacaataatgtgcaaca |
28009535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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