View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20581_low_3 (Length: 391)
Name: NF20581_low_3
Description: NF20581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20581_low_3 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 14874585 - 14874949
Alignment:
| Q |
16 |
ataatatttttcattagattagtttaagagataccttggtttaaaattttaaaccaaatacccgaaccaaacgaagcatattatgaagattaaaaaacta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14874585 |
ataatatttttcattagattagtttaagagataccttggttt-----tttaaaccaaatacccgaaccaaacgaagcatattatgaagattaaaaaacta |
14874679 |
T |
|
| Q |
116 |
tacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14874680 |
tacctgaataagcagcaatggagtgttaagcacatctgaagaaccaagaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatca |
14874779 |
T |
|
| Q |
216 |
cccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14874780 |
cccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaacc |
14874879 |
T |
|
| Q |
316 |
tacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
14874880 |
tacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatcttt |
14874949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 112 - 391
Target Start/End: Original strand, 14879962 - 14880241
Alignment:
| Q |
112 |
actatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagt |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
14879962 |
actatacctgaataagcatcaatggagtgttaatcacatctgaagaaccaggaacataataaagaagctcatccaagcaaggaaatggaggatgaagagc |
14880061 |
T |
|
| Q |
212 |
atcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
311 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14880062 |
atcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
14880161 |
T |
|
| Q |
312 |
aatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
391 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
14880162 |
aatctacctgcaaatggataataaaatacaagtgtttttgctaatgcttttctaataacatcaacaggatctttccctgc |
14880241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 113 - 391
Target Start/End: Complemental strand, 14757400 - 14757122
Alignment:
| Q |
113 |
ctatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| |
|
|
| T |
14757400 |
ctatacctgaataagcagcaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
14757301 |
T |
|
| Q |
213 |
tcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctta |
312 |
Q |
| |
|
||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14757300 |
tcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctacccggaccttccctta |
14757201 |
T |
|
| Q |
313 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14757200 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgc |
14757122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 115 - 391
Target Start/End: Original strand, 14769473 - 14769749
Alignment:
| Q |
115 |
atacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatc |
214 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||| ||||| ||||||| ||| |
|
|
| T |
14769473 |
atacctgaatcaccaacaatggacagttaagcacttctgaagaaccaggaacatcaaaaagaagctcatccaaacaaggaaaaggaggttgaagagcatc |
14769572 |
T |
|
| Q |
215 |
acccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
314 |
Q |
| |
|
||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14769573 |
accaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
14769672 |
T |
|
| Q |
315 |
ctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
14769673 |
ctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataaaatcaacaggatctttacctgc |
14769749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 114 - 391
Target Start/End: Original strand, 14789521 - 14789798
Alignment:
| Q |
114 |
tatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| | |
|
|
| T |
14789521 |
tatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
14789620 |
T |
|
| Q |
214 |
cacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaa |
313 |
Q |
| |
|
|||| || | || || |||||||| |||||||||||||||||||||| |||||| || | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14789621 |
caccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggaccttcccttaa |
14789720 |
T |
|
| Q |
314 |
tctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14789721 |
tctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgc |
14789798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 116 - 385
Target Start/End: Original strand, 91636 - 91905
Alignment:
| Q |
116 |
tacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||| |||| || |||||||||||||||| | |||| |
|
|
| T |
91636 |
tacctgaataagcagcaatggagtgttaagaacatctgaagaaccaggaacatcatagataagctcacccaagcatggaaatggaggatgaagtgcatca |
91735 |
T |
|
| Q |
216 |
cccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaatc |
315 |
Q |
| |
|
|| || | ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| || | |
|
|
| T |
91736 |
ccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccctcaacc |
91835 |
T |
|
| Q |
316 |
tacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
385 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| || | ||||||||||||| | ||||||||||||| |
|
|
| T |
91836 |
tacctgccaatggataataaaacacaagcgttttcgcaagggcttttctaataacaacaacagggtcttt |
91905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 172 - 391
Target Start/End: Complemental strand, 14857695 - 14857476
Alignment:
| Q |
172 |
aaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctcc |
271 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||| |||||| || ||||| | ||||||| |||||||||||||||||||||| |||||| | |
|
|
| T |
14857695 |
aaagaagctcatccaaacaaggaaaaggaggttgaagagcatcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatc |
14857596 |
T |
|
| Q |
272 |
agtgcaatccaccataagtttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataata |
371 |
Q |
| |
|
| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14857595 |
attacaatctaccataagcttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataata |
14857496 |
T |
|
| Q |
372 |
tcaacagggtcttttcctgc |
391 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
14857495 |
tcaacagggtctttccctgc |
14857476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 33003102 - 33003148
Alignment:
| Q |
339 |
acaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
385 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
33003102 |
acaagtgtttttgcaattgcttttctaataacatcaacagggtcttt |
33003148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 35368856 - 35368810
Alignment:
| Q |
339 |
acaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
385 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||| ||||||| |
|
|
| T |
35368856 |
acaagtgtttttgcaattgcttttctaataacatcaacaaggtcttt |
35368810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University