View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20581_low_6 (Length: 260)
Name: NF20581_low_6
Description: NF20581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20581_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 37619785 - 37619548
Alignment:
| Q |
15 |
acagacaaaggtatcgttttggtcatggcaagaccattcagctctctccacaaattccctagtagcatccttatgtgtattcttccttcattttcatctg |
114 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37619785 |
acagacaaaggtatggttttggtcgtggcaagaccattcagctctctccacaaattccctagtagcatccttatgtgtattcttccttcattttcatctg |
37619686 |
T |
|
| Q |
115 |
aaatattattctctctcatcatgcattgtatactactagcattatctcctctttcttgttcctcctgaacatcaaaattagtaagatatcagtaatctta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37619685 |
aaatattattctctctcatcatgcattgtatactactagcattatctcctctttcttgttcctcctgaacatcaaaattagtaagatatcagtaatctta |
37619586 |
T |
|
| Q |
215 |
attgaattttttacttattctgtagatatttgtgatga |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37619585 |
attgaattttttacttattctgtagatatttgtaatga |
37619548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 37628085 - 37627897
Alignment:
| Q |
15 |
acagacaaaggtatcgttttggtcatggcaagaccattcagctctctccacaaattccctagtagcatccttatgtgtattcttccttcattttcatctg |
114 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||| |||| ||||| ||||| |||| | ||| ||||||||||||||| |
|
|
| T |
37628085 |
acagacaaaggtatagtttttgacatggcaagaccattgagctctctccacaaatttcctattagcaaccttaggtgtttccttgcttcattttcatctg |
37627986 |
T |
|
| Q |
115 |
aaatattattctctctcatcatgcattgtatactactagcattatctcctctttcttgttcctcctgaacatcaaaattagtaagatat |
203 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| || | ||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
37627985 |
aaatattattttctttcatcaagcattgtatgctgcaagcattatcccctctttcttgttcctcctagacataaaaattagtaatatat |
37627897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University