View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20581_low_7 (Length: 245)
Name: NF20581_low_7
Description: NF20581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20581_low_7 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0928 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 9147155 - 9147387
Alignment:
| Q |
13 |
aaaatacccttagatttaattaacggttgatcttgattgaaaataataatataaacatgtatacatttccgcatacaatcctgcctctatctcatccgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9147155 |
aaaatacccttagatttaattaacggttgatcttgattaaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccat |
9147254 |
T |
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| Q |
113 |
ggtcattattggtgactactaactaagcagaagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattggtaa |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
9147255 |
ggtcattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctctaacttctcgatcgacgacaaactcattggaattggtaa |
9147354 |
T |
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| Q |
213 |
ttggattatcagagattgatgaatgaatttttc |
245 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
9147355 |
ttggattatcagagattgatgaatgaatttttc |
9147387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 5312993 - 5312761
Alignment:
| Q |
13 |
aaaatacccttagatttaattaacggttgatcttgattgaaaataataatataaacatgtatacatttccgcatacaatcctgcctctatctcatccgat |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5312993 |
aaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccat |
5312894 |
T |
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| Q |
113 |
ggtcattattggtgactactaactaagcagaagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattggtaa |
212 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5312893 |
ggtcattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattagtaa |
5312794 |
T |
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| Q |
213 |
ttggattatcagagattgatgaatgaatttttc |
245 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
5312793 |
ttcgattatcagagattgatgaatgaatttttc |
5312761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 54754316 - 54754084
Alignment:
| Q |
13 |
aaaatacccttagatttaattaacggttgatcttgattgaaaataataatataaacatgtatacatttccgcatacaatcctgcctctatctcatccgat |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54754316 |
aaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccat |
54754217 |
T |
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| Q |
113 |
ggtcattattggtgactactaactaagcagaagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattggtaa |
212 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54754216 |
ggtcattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattagtaa |
54754117 |
T |
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| Q |
213 |
ttggattatcagagattgatgaatgaatttttc |
245 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
54754116 |
ttcgattatcagagattgatgaatgaatttttc |
54754084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 29515831 - 29516051
Alignment:
| Q |
13 |
aaaatacccttagatttaattaacggttgatcttgattgaaaataataatataaacatgtatacatttccgcatacaatcctgcctctatctcatccgat |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29515831 |
aaaatacccttaga---aattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccat |
29515927 |
T |
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| Q |
113 |
ggtcattattggtgactactaactaagcagaagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattggtaa |
212 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29515928 |
ggtcattattggtgactactaactaagtaggagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattgaaattggtaa |
29516027 |
T |
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| Q |
213 |
ttggattatcagagattgatgaat |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
29516028 |
ttggattatcagagattgatgaat |
29516051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 53345027 - 53345122
Alignment:
| Q |
150 |
attgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattggtaattggattatcagagattgatgaatgaatttttc |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53345027 |
attgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcatcggaattggtaattggattatcagagattgatgaatgaatttttc |
53345122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 53344969 - 53345029
Alignment:
| Q |
19 |
cccttagatttaattaacggttgatcttgattgaaaataataatataaacatgtatacatt |
79 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53344969 |
cccttagatataattaacggttgatcttgattgaaaataataatgtaaacatgtatacatt |
53345029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0928 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0928
Description:
Target: scaffold0928; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 3261 - 3034
Alignment:
| Q |
13 |
aaaatacccttagatttaattaacggttgatcttgattgaaaataataatataaacatgtatacatttccgcatacaatcctgcctctatctcatccgat |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3261 |
aaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccat |
3162 |
T |
|
| Q |
113 |
ggtcattattggtgactactaactaagcagaagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattggtaa |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3161 |
ggtcattattggtgactactaactaagcaggagttgaattgaagta-----tctgtatctgtaacttctccatcgacgacaaactcattggaattggtaa |
3067 |
T |
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| Q |
213 |
ttggattatcagagattgatgaatgaatttttc |
245 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3066 |
ttggattatcagagattgatgaatgaatttttc |
3034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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