View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20582_high_1 (Length: 907)
Name: NF20582_high_1
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Original strand, 29978497 - 29979025
Alignment:
| Q |
18 |
actttctctttgtgtttgtgctgatgcaagacttactctgaatgcacactactactcgatactcacaataaatatagttgaacacattttttgtagtttt |
117 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29978497 |
actttttctttgtgtttgtgctcaagcaagacttaatcccaatgcacactgctactcgatactcacaataaata--gttgaacacattttttgtagtttt |
29978594 |
T |
|
| Q |
118 |
gcacctttgtgtgtggtccacattggatagatagcgtatgcaagcagtaaatgactaaacaaggagagttccaattccaaatcaaattatttcaattttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29978595 |
gcacctttgtgtgtggtccacattggatagatagcgtatgcaagcagtaaatgactaaacaaggagagttccaattccaaatcaaattatttcaattttg |
29978694 |
T |
|
| Q |
218 |
attttcccaatttgcctcttgtttttcaaaagggcgggagtatttgatttcatatgaaatttgaattatagttttggcgaactaaaataatttcaaacct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29978695 |
attttcccaatttgcctcttgtttttcaaaagggcgggagtatttgatttcatatgaaatttgaattatagttttggcgaactaaaataatttcaaacct |
29978794 |
T |
|
| Q |
318 |
tatccaatccaatggatgatgttgtgg-nnnnnnngtcacattacgttaccctttcattaattctcttggactttcccatttatttcacttttgatccct |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
29978795 |
tatccaatccaatggatgatgttgtggttttttttgtcacattacgttaccctttcattaattctcttggactttcccacttatttcacttttgat-cct |
29978893 |
T |
|
| Q |
417 |
aaataattttccaatttatagtgtctcaattaattaacacaagcccaccgtttttctctttttaacctatgaatgaaatcaataaagttgatatattagc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29978894 |
aaataattttccaatttatagtgtctcaattaattaacacaagcccaccgtttttctctttttaacctatgaatgaaatcaataaagttgatatattagc |
29978993 |
T |
|
| Q |
517 |
aagtcaaatcttttaaaatgatgtaattagta |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29978994 |
aagtcaaatcttttaaaatgatgtaattagta |
29979025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 624 - 895
Target Start/End: Original strand, 29986514 - 29986785
Alignment:
| Q |
624 |
aacaaaaagtaaataacacagtttagagaagaattgtttttattctaactaaaactactatacacatatattcaattaaacgacgttatattgtcactcc |
723 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
29986514 |
aacaaaaagtaaataatacagtttagataaaaattgtttttattctaactaaaactattatacacatatatttaattaaacgacgtcatattgtcactcc |
29986613 |
T |
|
| Q |
724 |
taaaatattttttgagggatagtttctaaaaattaagaatcaaaaacattatatataatatgtaatttattctgttttttaataagaaagatcaaacgag |
823 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
29986614 |
ttaaatattttttgagggatagtttttaaaaattaagaatcaaaaacattatatataatatgtaatttattatgttttttaataagaaagaccaaacgag |
29986713 |
T |
|
| Q |
824 |
tggttaatttgcccaatatcgtttagatgaaatgtcacccgtctcttctaacttaaatgatatcacaggttc |
895 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
29986714 |
tggttagtttatcgaatatcgtttagatgaaatgtcacttgtctctcctaatttaaatgatatcacaggttc |
29986785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University