View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_high_14 (Length: 368)
Name: NF20582_high_14
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 33440944 - 33440610
Alignment:
| Q |
20 |
aagagcaggatctaaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagct |
119 |
Q |
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| T |
33440944 |
aagagcaggatctaaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagct |
33440845 |
T |
|
| Q |
120 |
acccaaatttttccattaggaagcaatgctgaagttgaatgatacattcttgatatttgtgttggattcaattgtgtaaacctttgaccctttagtttct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440844 |
acccaaatttttccattaggaagcaatgctgaagttgaatgatacattcttgatatttgtgttggattcaattgtgtaaacctttgaccctttagtttct |
33440745 |
T |
|
| Q |
220 |
ctggactatacaatgctggtgtgaggtttggagtatcagcatcccaccatccagctgttcccctttgtgcaccattgatgaacaaaagttgtccatttgg |
319 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440744 |
ctggattatacaatgctggtgtgaggtttggagtatcagcatcccaccatccagctgttcccctttgtgcaccattgatgaacaaaagttgtccatttgg |
33440645 |
T |
|
| Q |
320 |
gaggattatacaatctcccattattctccttgatg |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
33440644 |
gaggattatacaatctcccattattctccttgatg |
33440610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 354
Target Start/End: Complemental strand, 43344102 - 43343781
Alignment:
| Q |
33 |
aaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagctacccaaatttttc |
132 |
Q |
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||||| || ||||| ||| |||||||||||||||||||||| | | ||| ||| || || || ||||||||||| |||||| |||||||| || | |
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| T |
43344102 |
aaataaggaggagagaatgcttcaactctagtctcagttggatacttatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttac |
43344003 |
T |
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| Q |
133 |
cattaggaagcaatgctgaagttgaatgatacattcttgatatttgtgttggattcaattgtgtaaacctttgaccctttagtttctctggactatacaa |
232 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||| ||||| || || ||| ||||||| |||||| | || |||||| ||||||| |
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| T |
43344002 |
cattaggaagcacagccgaagttgaatgatacattcttgcaatttgagtaggcatcatcgccttaaacctcaaacccttaggcttatctggattatacaa |
43343903 |
T |
|
| Q |
233 |
tgctggtgtgaggtttggagtatcagcatcccaccatccagctgttcccctttgtgcaccattgatgaacaaaagttgtccatttgggaggattatacaa |
332 |
Q |
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| |||||| ||||| ||||||||||||||| ||| ||| || ||||||||||||||||||||| |||| ||||||||||||||| | | | |
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| T |
43343902 |
cacaggtgtgtaatttggctggtcagcatcccaccatgcagatgtaccgtattgtgcaccattgatgaacaatagttctccatttgggaggataagagca |
43343803 |
T |
|
| Q |
333 |
tctcccattattctccttgatg |
354 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
43343802 |
tctcccatggttctccttgatg |
43343781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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