View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_high_16 (Length: 354)
Name: NF20582_high_16
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 29978497 - 29978816
Alignment:
| Q |
18 |
actttctctttgtgtttgtgctgatgcaagacttactctgaatgcacactactactcgatactcacaataaatatagttgaacacattttttgtagtttt |
117 |
Q |
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| T |
29978497 |
actttttctttgtgtttgtgctcaagcaagacttaatcccaatgcacactgctactcgatactcacaataaata--gttgaacacattttttgtagtttt |
29978594 |
T |
|
| Q |
118 |
gcacctttgtgtgtggtccacattggatagatagcgtatgcaagcagtaaatgactaaacaaggagagttccaattccaaatcaaattatttcaattttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29978595 |
gcacctttgtgtgtggtccacattggatagatagcgtatgcaagcagtaaatgactaaacaaggagagttccaattccaaatcaaattatttcaattttg |
29978694 |
T |
|
| Q |
218 |
attttcccaatttgcctcttgtttttcaaaagggcgggagtatttgatttcatatgaaatttgaattatagttttggcgaactaaaataatttcaaacct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29978695 |
attttcccaatttgcctcttgtttttcaaaagggcgggagtatttgatttcatatgaaatttgaattatagttttggcgaactaaaataatttcaaacct |
29978794 |
T |
|
| Q |
318 |
tatccaatccaatggatgatgt |
339 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29978795 |
tatccaatccaatggatgatgt |
29978816 |
T |
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