View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_high_19 (Length: 339)
Name: NF20582_high_19
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 3915195 - 3914880
Alignment:
| Q |
17 |
atgtataagtgcacctaattaacatgtatgaataaattctactttaactttgaagcggtaacctgtatgcttgtcttgtggcatataccagtatattaga |
116 |
Q |
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| T |
3915195 |
atgtataagtgcacctaattaacatgtatgaataaattctactttaactttgaagcggtaagctgtatgcttgtcttgtggcatataccagtatattaga |
3915096 |
T |
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| Q |
117 |
caataattttatattggatagaacctacttaggttggcctggtggtattagcttggaacttgagggtgtgctcgatttgattctccccgatatcaatttg |
216 |
Q |
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| T |
3915095 |
caataattttatattggatagaacctacttgggttggcctggtggtattagcttggaacctgagggtgtgttcggtttgattctccccaatatcaatttg |
3914996 |
T |
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| Q |
217 |
tgtggactagtttagcttattcnnnnnnnnnt--attttaagaacattgtgaaattttgtttcagactatggtggattgatatacatggaggacctctta |
314 |
Q |
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| T |
3914995 |
tgtgggctagtttaacttattcaaaaaaaaataaaaattaagaacattgcgaaattatgtttcagactatggtggattgatatacatggaggacctctta |
3914896 |
T |
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| Q |
315 |
ttatttgttttttaag |
330 |
Q |
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| T |
3914895 |
ttatttgttttttaag |
3914880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 18437090 - 18437136
Alignment:
| Q |
143 |
acttaggttggcctggtggtattagcttggaacttgagggtgtgctc |
189 |
Q |
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| T |
18437090 |
acttaggttggcctagtggtattaacttgggacttgagagtgtgctc |
18437136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 23052599 - 23052549
Alignment:
| Q |
138 |
aacctacttaggttggcctggtggtattagcttggaacttgagggtgtgct |
188 |
Q |
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| T |
23052599 |
aacccacttaggttggcctggtggtattggcttgggacttgggagtgtgct |
23052549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 42465596 - 42465555
Alignment:
| Q |
148 |
ggttggcctggtggtattagcttggaacttgagggtgtgctc |
189 |
Q |
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| T |
42465596 |
ggttggtctgatggtattagcttggaacttgggggtgtgctc |
42465555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 27776171 - 27776223
Alignment:
| Q |
137 |
gaacctacttaggttggcctggtggtattagcttggaacttgagggtgtgctc |
189 |
Q |
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| T |
27776171 |
gaacccacttgggttggcctggtggtatacgcttgggacttgagagtgtgctc |
27776223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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