View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_high_23 (Length: 279)
Name: NF20582_high_23
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 2600602 - 2600854
Alignment:
| Q |
20 |
cggaaaacactcactatgattcaattcaacaacaagctaccatacctacctcgaccgacgtttaccgggctttgatcgttgaccctttttcccaaaagga |
119 |
Q |
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| T |
2600602 |
cggaaaacactcactatgattcaattcaacaacaagctaccatacctacctcgaccgacgtttaccgggctttgatcgttgaccctttttcccaaaagga |
2600701 |
T |
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| Q |
120 |
ctacagaatccacacgcagagacctttggagacggtggttcgatcgctggtgaaacttttccggtacggtatcctcgtccagcaccggtggagcggcttc |
219 |
Q |
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| T |
2600702 |
ctacagaatccacacgcggagacctttggagacggtggttcgatcgctggtgaaacttttccggtacggtatcctcttccagcaccggtggaatggcttc |
2600801 |
T |
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| Q |
220 |
tttgtacggtggttttcacatgaagctctttggaattattagtagtattatct |
272 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2600802 |
tttgtacggtggttttcacacgaagctctttggaattattagtagtattatct |
2600854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 44510605 - 44510489
Alignment:
| Q |
107 |
tttcccaaaaggactacagaatccacacgcagagacctttggagacggtggttcgatcgctggtgaaacttttccggtacggtatcctcgtccagcaccg |
206 |
Q |
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||||||||||| || ||| || ||||| ||||| | | | ||||||||||| || ||||| || |||||||||||||||||||| || ||||| ||||| |
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| T |
44510605 |
tttcccaaaagcaccacaaaacccacaagcagaaatcctaggagacggtggctcaatcgccggagaaacttttccggtacggtaaccacgtcctccaccg |
44510506 |
T |
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| Q |
207 |
gtggagcggcttctttg |
223 |
Q |
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|||| || |||||||| |
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| T |
44510505 |
ttggaacgacttctttg |
44510489 |
T |
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